Publications 2016-2017

Yadav VR, Rao G, Houson H, Hedrick A, Awasthi S, Roberts PR, Awasthi V. Nanovesicular liposome-encapsulated hemoglobin (LEH) prevents multi-organ injuries in a rat model of hemorrhagic shock. Eur J Pharm Sci. 2016 Oct 10;93:97-106. doi: 10.1016/j.ejps.2016.08.010. PubMed [citation] PMID: 27503458,  PMCID: PMC5035221 

Rao G, Yadav VR, Awasthi S, Roberts PR, Awasthi V. Effect of liposome-encapsulated hemoglobin resuscitation on proteostasis in small intestinal epithelium after hemorrhagic shock. Am J Physiol Gastrointest Liver Physiol. 2016 Jul 1;311(1):G180-91. doi: 10.1152/ajpgi.00157.2016. PubMed

Meng X, Rose L, Han Y, Deng J, Xiang Y. Vaccinia virus A6 is a two-domain protein requiring a cognate N-terminal domain for full viral membrane assembly activity.  J Virol. 2017 Mar 8. doi:pii: JVI.02405-16. 10.1128/JVI.02405-16. [Epub ahead of print] PubMed [citation] PMID: 28275183 

Walgama C, Al Mubarak ZH, Zhang B, Akinwale M, Pathiranage A, Deng J, Berlin KD, Benbrook DM, Krishnan S. Label-Free Real-Time Microarray Imaging of Cancer Protein-Protein Interactions and Their Inhibition by Small Molecules. Anal Chem. Mar15, 2016. 88(6):3130-5. Epub Feb 29, 2016. PMID: 26886845

Lavey NP, Coker JA, Ruben EA, Duerfeldt AS. Sclerotiamide: The First Non-Peptide-Based Natural Product Activator of Bacterial Caseinolytic Protease P. J Nat Prod. Apr 22, 2016. 79(4):1193-7. Epub Mar 11, 2016. PMID: 26967980

Di XJ, Wang YJ, Han DY, Fu YL, Duerfeldt AS, Blagg BS, Mu TW. Grp94 Protein Delivers γ-Aminobutyric Acid Type A (GABAA) Receptors to Hrd1 Protein-mediated Endoplasmic Reticulum-associated Degradation. J Biol Chem. Apr 20, 2016. 291(18):9526-39. Epub Mar 4, 2016. PMID: 26945068

Feng, Y., Kleinstreuer, C., Nicolas, C., Rostami, A. (2016). Computational transport, phase change and deposition analysis of inhaled multicomponent droplet-vapor mixtures in an idealized human upper lung model. Journal of Aerosol Science, 96, 96-123 (PR)

Chen, X., Feng, Y., Zhong, W., Kleinstreuer, C. (2016). Numerical investigation of the interaction, transport and deposition of multicomponent droplets in a simple mouth-throat model, Journal of Aerosol Science. 105, 108-127 (PR)

Chen, X., Zhong, W., Tom, J., Kleinstreuer, C., Feng, Y., He, X. (2016). Experimental-computational study of fibrous particle transport and deposition in a bifurcating lung model, Particuology, 28, 102-113. (PR)

Feng, Y., Xu, Z., & Haghnegahdar, A. (2017). Computational Fluid-Particle Dynamics Modeling for Unconventional Inhaled Aerosols in Human Respiratory Systems, Aerosols - Science and Case Studies, Dr. Volkov Konstantin (Ed.), InTech, DOI: 10.5772/65361 (BC)

Haghnegahdar, A., Feng, Y. (2017). The translocation of nicotine from human lung to systemic regions due to E0cigarette aerosol inhalation: a numerical study, 5th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Pittsburgh, PA, USA. (A)

Feng, Y., Kleinstreuer, C. (2016). A subject-variability study of airflow transport and deposition for three human lung-airway configurations, Sixteenth Annual Early Career Technical Conference, Birmingham, Alabama, USA. (A)

Feng, Y., Wong, K., Kleinstreuer, C. (2016). Computational analysis of inhaled aerosol deposition from E-cigarettes for the Assessment of potential health effects, 2016 AAAR Annual Conference, Portland, Oregon, USA (A)

Rostami, A., Castro, N., Pithawalla, Y., Oldham, M. J., Zhang, J., Li, W., Feng, Y. (2016). Computational modeling of E-vapor aerosol dynamics and deposition in respiratory tract, 70th Tobacco Science Research Conference (TSRC), Palm Beach Gardens, Florida, USA (A)

Ghousifam N, Mortazavian H, Bhowmick R, Vasquez Y, Blum FD, Gappa-Fahlenkamp H. A three-dimensional in vitro model to demonstrate the haptotactic effect of monocyte chemoattractant protein-1 on atherosclerosis-associated monocyte migration. Int J Biol Macromol. 2017 Apr;97:141-147. doi: 10.1016/j.ijbiomac.2016.12.072. PubMed [citation] PMID: 28041913

Sharma M, Bhowmick R, Gappa-Fahlenkamp H. Drug-Loaded Nanoparticles Embedded in a Biomembrane Provide a Dual-Release Mechanism for Drug Delivery to the Eye. J Ocul Pharmacol Ther. 2016 Nov;32(9):565-573. PubMed [citation] PMID: 27652887

Mix LT, Hara M, Rathod R, Kumauchi M, Hoff WD, Larsen DS. Noncanonical Photocycle Initiation Dynamics of the Photoactive Yellow Protein (PYP) Domain of the PYP-Phytochrome-Related (Ppr) Photoreceptor. J Phys Chem Lett. 2016 Dec 15;7(24):5212-5218. PubMed [citation] PMID: 27973895

Calkins S, Couger MB, Jackson C, Zandler J, Hudgins GC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. Genom Data. 2016 Oct 7;10:91-96. PubMed [citation] PMID:  27766204, PMCID: PMC5065635

Mix LT, Kirpich J, Kumauchi M, Ren J, Vengris M, Hoff WD, Larsen DS. Bifurcation  in the Ultrafast Dynamics of the Photoactive Yellow Proteins from Leptospira biflexa and Halorhodospira halophila. Biochemistry. 2016 Nov 8;55(44):6138-6149.  PubMed [citation] PMID: 27749038

Avramov AP, Couger MB, Hartley EL, Land C, Wellendorf R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential. Genom Data. 2016 Sep 17;10:54-60. PubMed [citation] PMID: 27699150, PMCID: PMC5035333

Moghadam F, Couger MB, Russ B, Ramsey R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence and detailed analysis of Pantoea eucrina strain  Russ and implication for opportunistic pathogenesis. Genom Data. 2016 Sep 20;10:63-68. PubMed [citation] PMID: 27699151, PMCID: PMC5037212

Hanafy RA, Couger MB, Baker K, Murphy C, O'Kane SD, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. Genom Data. 2016 Aug 8;9:148-53. doi: 10.1016/j.gdata.2016.08.006. PubMed [citation] PMID: 27583205, PMCID: PMC4993860

Miller NT, Fuller D, Couger MB, Bagazinski M, Boyne P, Devor RC, Hanafy RA, Budd  C, French DP, Hoff WD, Youssef N. Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential. Genom Data. 2016 Aug 4;9:154-9. doi: 10.1016/j.gdata.2016.08.004. PubMed [citation] PMID: 27583206, PMCID: PMC4993851

van der Gulik PT, Hoff WD. Anticodon Modifications in the tRNA Set of LUCA and the Fundamental Regularity in the Standard Genetic Code. PLoS One. 2016 Jul 25;11(7):e0158342. doi: 10.1371/journal.pone.0158342. PubMed [citation] PMID: 27454314, PMCID: PMC4959769

Estrada M, Burnett M, Campbell AG, Campbell PB, Denetclaw WF, Gutiérrez CG, Hurtado S, John GH, Matsui J, McGee R, Okpodu CM, Robinson TJ, Summers MF, Werner-Washburne M, Zavala M. Improving Underrepresented Minority Student Persistence in STEM. CBE Life Sci Educ. 2016 fall;15(3). doi:pii: es5. 10.1187/cbe.16-01-0038. PubMed [citation] PMID: 27543633, PMCID: PMC5008901

Fu B, Wang L, Li S, Dorf ME. ZMPSTE24 defends against influenza and other pathogenic viruses. J Exp Med. 2017 Feb 28. doi:pii: jem.20161270. 10.1084/jem.20161270. [Epub ahead of print] PubMed [citation] PMID: 28246125

Wang L, Fu B, Li W, Patil G, Liu L, Dorf ME, Li S. Comparative influenza protein  interactomes identify the role of plakophilin 2 in virus restriction. Nat Commun. 2017 Feb 7;8:13876. doi: 10.1038/ncomms13876. PubMed [citation] PMID: 28169297, PMCID: PMC530970

Wang L, Li W, Li S, (2016),  A high throughput assay for screening host restriction factors and antivirals targeting influenza A virus. Frontiers in Microbiology 7:858. Doi: 10.3389/fmicb.2016.008

Wang Y, Lin D, Wang X, Zhu W, Ye J, Li G, Ma Z, Deng X. The impact of a novel peach gum-derived polysaccharide on postprandial blood glucose control in streptozotocin-induced diabetic mice. Int J Biol Macromol. 2017 May;98:379-386. doi: 10.1016/j.ijbiomac.2017.01.085. PubMed [citation] PMID: 2811522

Wu L, Guo X, Hartson SD, Davis MA, He H, Medeiros DM, Wang W, Clarke SL, Lucas EA, Smith BJ, von Lintig J, Lin D. Lack of β, β-carotene-9', 10'-oxygenase 2 leads to hepatic mitochondrial dysfunction and cellular oxidative stress in mice. Mol Nutr Food Res. 2016 Dec 19. doi: 10.1002/mnfr.201600576. [Epub ahead of print] PubMed [citation] PMID: 27991717

Chen S, Lin D, Gao Y, Cao X, Shen X. A novel antioxidant peptide derived from wheat germ prevents high glucose-induced oxidative stress in vascular smooth muscle cells in vitro. Food Funct. 2017 Jan 25;8(1):142-150. doi:10.1039/c6fo01139j. PubMed [citation] PMID: 2792110

Wu J, Chen L, Lin D, Ma Z, Deng X. Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus Fruits. J Agric Food Chem. 2016 Nov 30;64(47):9089-9098. PubMed [citation] PMID: 2779459

Wu L, Guo X, Wang W, Medeiros DM, Clarke SL, Lucas EA, Smith BJ, Lin D. Molecular aspects of β, β-carotene-9', 10'-oxygenase 2 in carotenoid metabolism and diseases. Exp Biol Med (Maywood). 2016 Nov;241(17):1879-1887. PubMed [citation] PMID: 27390265, PMCID: PMC50684697

Song H, Wu T, Xu D, Chu Q, Lin D, Zheng X. Dietary sweet cherry anthocyanins attenuates diet-induced hepatic steatosis by improving hepatic lipid metabolism in mice. Nutrition. 2016 Jul-Aug;32(7-8):827-33. doi: 10.1016/j.nut.2016.01.007.  PubMed [citation] PMID: 27158052

Shaw JH, Behar AR, Snider TA, Allen NA, Lutter EI. Comparison of Murine Cervicovaginal Infection by Chlamydial Strains: Identification of Extrusions Shed In vivo. Front Cell Infect Microbiol. 2017 Feb 3;7:18. doi: 10.3389/fcimb.2017.00018. PubMed [citation] PMID: 28217555, PMCID: PMC5289954

McFarlane D, Banse H, Knych HK, Maxwell LK. Pharmacokinetic and pharmacodynamic properties of pergolide mesylate following long-term administration to horses with pituitary pars intermedia dysfunction. J Vet Pharmacol Ther. 2017 Apr;40(2):158-164. doi: 10.1111/jvp.12339. Epub 2016 Jun 15. PMID: 27301465

Banse HE, Holbrook TC, Frank N, McFarlane D. Relationship of skeletal muscle inflammation with obesity and obesity-associated hyperinsulinemia in horses. Can J Vet Res. 2016 Jul;80(3):217-24. PubMed [citation] PMID: 27408335, PMCID:PMC4924556

Hart KA, Wochele DM, Norton NA, McFarlane D, Wooldridge AA, Frank N. Effect of Age, Season, Body Condition, and Endocrine Status on Serum Free Cortisol Fraction and Insulin Concentration in Horses. J Vet Intern Med. 2016 Mar-Apr;30(2):653-63. doi: 10.1111/jvim.13839. Epub 2016 Feb 9. PMID: 26860336

Karikoski NP, Patterson-Kane JC, Singer ER, McFarlane D, McGowan CM. Lamellar pathology in horses with pituitary pars intermedia dysfunction. Equine Vet J. 2016 Jul;48(4):472-8. doi: 10.1111/evj.12450. Epub 2015 Jun 4. PMID: 25869529

Cranston CC, Miller KE, Davis JL, Rhudy JL.. Preliminary validation of a brief measure of the frequency and severity of nightmares: The Trauma-Related Nightmare Survey. J Trauma Dissociation. 2017 Jan-Feb;18(1):88-99. doi: 10.1080/15299732.2016.1191578. Epub 2016 May 26. PMID: 27229449

Wang T, Miller KE. Characterization of glutamatergic neurons in the rat atrial intrinsic cardiac ganglia that project to the cardiac ventricular wall. Neuroscience. 2016 Aug 4;329:134-50. doi: 10.1016/j.neuroscience.2016.05.002. PubMed [citation] PMID: 27167082

Rudd JM, Ashar HK, Chow VTK, Nasaraju T. (2016) Lethal synergism between influenza and Streptococcus pneumonia. J Infect Pulm Dis 2(2) doi: http:// dx.doi.org/10.16966/2470-3176.114

Narasaraju T, Harshin A. (2016) Neutrophils as possible therapeutic targets in severe influenza pneumonia. J Infect Pulm Dis 2(2) doi: http:// dx.doi.org/10.16966/2470-3176.115

Meshram CD, Baviskar PS, Ognibene CM, Oomens AG. The Respiratory Syncytial Virus  Phosphoprotein, Matrix Protein, and Fusion Protein Carboxy-Terminal Domain Drive  Efficient Filamentous Virus-Like Particle Formation. J Virol. 2016 Nov 14;90(23):10612-10628. PubMed [citation] PMID: 27654298, PMCID: PMC5110176

Khanam S, Guragain M, Lenaburg DL, Kubat R, Patrauchan MA. Calcium induces tobramycin resistance in Pseudomonas aeruginosa by regulating RND efflux pumps. Cell Calcium. 2017 Jan;61:32-43. doi: 10.1016/j.ceca.2016.11.004. PubMed [citation] PMID: 28034459

Ektate K, Kapoor A, Maples D, Tuysuzoglu A, VanOsdol J, Ramasami S, Ranjan A. Motion Compensated Ultrasound Imaging Allows Thermometry and Image Guided Drug Delivery Monitoring from Echogenic Liposomes. Theranostics. 2016 Aug
14;6(11):1963-74. doi: 10.7150/thno.15922. PubMed [citation] PMID: 27570563, PMCID: PMC4997249

VanOsdol J, Ektate K, Ramasamy S, Maples D, Collins W, Malayer J, Ranjan A. Sequential HIFU heating and nanobubble encapsulation provide efficient drug penetration from stealth and temperature sensitive liposomes in colon cancer. J Control Release. 2017 Feb 10;247:55-63. doi: 10.1016/j.jconrel.2016.12.033. PubMed [citation] PMID: 28042085, PMCID: PMC5293599

Sethuraman SN, Ranjan A. Neoantigen activation, protein translocation and targeted drug delivery in combination with radiotherapy. Ther Deliv. 2016 Jun;7(6):377-85. doi: 10.4155/tde-2016-0005. Epub 2016 Jun 2. PMID: 27250535

Flynn N, Topal ÇÖ, Hikkaduwa Koralege RS, Hartson S, Ranjan A, Liu J, Pope C, Ramsey JD. Effect of cationic grafted copolymer structure on the encapsulation of bovine serum albumin. Mater Sci Eng C Mater Biol Appl. 2016 May;62:524-31. doi: 10.1016/j.msec.2016.01.092. Epub 2016 Feb 1. PMID: 26952455

Wardlow R, Bing C, VanOsdol J, Maples D, Ladouceur-Wodzak M, Harbeson M, Nofiele J, Staruch R, Ramachandran A, Malayer J, Chopra R, Ranjan A. Targeted antibiotic delivery using low temperature-sensitive liposomes and magnetic resonance-guided high-intensity focused ultrasound hyperthermia. Int J Hyperthermia. 2016 May;32(3):254-64. doi: 10.3109/02656736.2015.1134818. Epub 2016 Feb 18. PMID: 26892114

Sahoo K, Koralege RS, Flynn N, Koteeswaran S, Clark P, Hartson S, Liu J, Ramsey JD, Pope C, Ranjan A. Nanoparticle Attachment to Erythrocyte Via the Glycophorin A Targeted ERY1 Ligand Enhances Binding without Impacting Cellular Function.  Pharm Res. 2016 May;33(5):1191-203. doi: 10.1007/s11095-016-1864-x. Epub 2016 Jan 26. PMID: 26812966

Abdali N, Parks JM, Haynes KM, Chaney JL, Green AT, Wolloscheck D, Walker JK, Rybenkov VV, Baudry J, Smith JC, Zgurskaya HI. Reviving Antibiotics: Efflux Pump Inhibitors That Interact with AcrA, a Membrane Fusion Protein of the AcrAB-TolC Multidrug Efflux Pump. ACS Infect Dis. 2017 Jan 13;3(1):89-98. doi: 10.1021/acsinfecdis.6b00167. PubMed [citation] PMID: 27768847

Krishnamoorthy G, Wolloscheck D, Weeks JW, Croft C, Rybenkov VV, Zgurskaya HI. Breaking the Permeability Barrier of Escherichia coli by Controlled Hyperporination of the Outer Membrane. Antimicrob Agents Chemother. 2016 Nov 21;60(12):7372-7381. PubMed [citation] PMID: 27697764, PMCID: PMC5119019

Zhao H, Clevenger AL, Ritchey JW, Zgurskaya HI, Rybenkov VV. Pseudomonas aeruginosa Condensins Support Opposite Differentiation States. J Bacteriol. 2016 Oct 7;198(21):2936-2944. PubMed [citation] PMID: 27528506, PMCID: PMC5055598 

Rybenkov VV. When Maxwellian demon meets action at a distance: Comment on "Disentangling DNA molecules" by Alexander Vologodskii. Phys Life Rev. 2016 Sep;18:150-153. doi: 10.1016/j.plrev.2016.06.010. No abstract available. PubMed [citation] PMID: 27372001

Mahapatra S, Gallaher B, Smith SC, Graham JG, Voth DE, Shaw EI. Coxiella burnetii Employs the Dot/Icm Type IV Secretion System to Modulate Host NF-κB/RelA Activation. Front Cell Infect Microbiol. 2016 Dec 19;6:188. doi: 10.3389/fcimb.2016.00188. PubMed [citation] PMID: 28066723, PMCID: PMC5165255 

Shaw JH, Behar AR, Snider TA, Allen NA, Lutter EI. Comparison of Murine Cervicovaginal Infection by Chlamydial Strains: Identification of Extrusions Shed In vivo. Front Cell Infect Microbiol. 2017 Feb 3;7:18. doi:10.3389/fcimb.2017.00018. PubMed [citation] PMID: 28217555, PMCID: PMC5289954

Xu G, Wilson KS, Okamoto RJ, Shao JY, Dutcher SK, Bayly PV. Flexural Rigidity and Shear Stiffness of Flagella Estimated from Induced Bends and Counterbends. Biophys J. 2016 Jun 21;110(12):2759-68. doi: 10.1016/j.bpj.2016.05.017.16;114:118-127. PubMed [citation] PMID: 27346907, PMCID: PMC4915379

Farag IF, Youssef NH, Elshahed MS. Global distribution patterns and pangenomic diversity of the candidate phylum "Latescibacteria" (WS3). Appl Environ Microbiol. 2017 Mar 17. doi:pii: AEM.00521-17. 10.1128/AEM.00521-17. [Epub ahead  of print] PubMed [citation] PMID: 28314726

Morrison JM, Murphy CL, Baker K, Zamor RM, Nikolai SJ, Wilder S, Elshahed MS, Youssef NH. Microbial communities mediating algal detritus turnover under anaerobic conditions. PeerJ. 2017 Jan 10;5:e2803. doi: 10.7717/peerj.2803. PubMed [citation] PMID: 28097050, PMCID: PMC5228501

Jousset A, Bienhold C, Chatzinotas A, Gallien L, Gobet A, Kurm V, Küsel K, Rillig MC, Rivett DW, Salles JF, van der Heijden MG, Youssef NH, Zhang X, Wei Z, Hol WH. Where less may be more: how the rare biosphere pulls ecosystems strings. ISME J.  2017 Apr;11(4):853-862. doi: 10.1038/ismej.2016.174. PubMed [citation] PMID: 28072420

Calkins S, Youssef NH. Insights into the Utility of the Focal Adhesion Scaffolding Proteins in the Anaerobic Fungus Orpinomyces sp. C1A. PLoS One. 2016  Sep 29;11(9):e0163553. doi: 10.1371/journal.pone.0163553. PubMed [citation] PMID: 27685796, PMCID: PMC5042518

Morrison JM, Elshahed MS, Youssef N. A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp. strain C1A. PeerJ. 2016 Aug 3;4:e2289. doi: 10.7717/peerj.2289. PubMed [citation] PMID: 27547582, PMCID: PMC4975031

Calkins S, Elledge NC, Hanafy RA, Elshahed MS, Youssef N. A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates. J Microbiol Methods. 2016 Aug;127:206-13. doi: 10.1016/j.mimet.2016.05.019. PubMed [citation] PMID: 27288952