Publications July 1, 2018 - June 30, 2019

Awasthi S, Vilekar P, Conkleton A, Rahman N. Dendritic cell-based immunization induces Coccidioides Ag2/PRA-specific immune response. Vaccine. 2019 Mar 14;37(12):1685-1691. doi: 10.1016/j.vaccine.2019.01.034. Epub 2019 Feb 20. PubMed PMID: 30795939.

Awasthi S, Singh B, Ramani V, Xie J, Kosanke S. TLR4-interacting SPA4 peptide improves host defense and alleviates tissue injury in a mouse model of Pseudomonas aeruginosa lung infection. PLoS One. 2019 Jan 28;14(1): e0210979. doi: 10.1371/journal.pone.0210979. eCollection 2019. PubMed PMID: 30689633; PubMed Central PMCID: PMC6349318.

Davis MS, Geor RJ, Williamson KK. Effect of Endurance Conditioning on Insulin-mediated Glucose Clearance in Dogs. Med Sci Sports Exerc. 2018 Dec;50(12):2494-2499. doi: 10.1249/MSS.0000000000001718. PubMed PMID: 30001223.

Hu Y, Cao X, Li X, Wang Y, Boons GJ, Deng J, Jiang H. The three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1. Insect Biochem Mol Biol. 2019 Mar 21. pii: S0965-1748(18)30391-6. doi: 10.1016/j.ibmb.2019.03.001. [Epub ahead of print] PubMed PMID: 30905759.

Pathak PK, Peng S, Meng X, Han Y, Zhang B, Zhang F, Xiang Y, Deng J. Structure of a lipid-bound viral membrane assembly protein reveals a modality for enclosing the lipid bilayer. Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7028-7032. doi: 10.1073/pnas.1805855115. Epub 2018 Jun 18. PubMed PMID: 29915071; PubMed Central PMCID: PMC6142198.

Lavey NP, Shadid T, Ballard JD, Duerfeldt AS. Clostridium difficile ClpP Homologues Are Capable of Uncoupled Activity and Exhibit Different Levels of Susceptibility to Acyldepsipeptide Modulation. ACS Infect Dis. 2018 Nov 26. doi:  10.1021/acsinfecdis.8b00199. [Epub ahead of print] PubMed PMID: 30411608.

Dou XZ, Nath D, Shin Y, Ma JX, Duerfeldt AS. Structure-guided evolution of a 2-phenyl-4-carboxyquinoline chemotype into PPARα selective agonists: New leads for oculovascular conditions. Bioorg Med Chem Lett. 2018 Sep 1;28(16):2717-2722. doi: 10.1016/j.bmcl.2018.03.010. Epub 2018 Apr 5. PubMed PMID: 29628329; PubMed Central PMCID: PMC6119630.

Amer M, Feng Y, Ramsey JD. Using CFD simulations and statistical analysis to correlate oxygen mass transfer coefficient to both geometrical parameters and operating conditions in a stirred-tank bioreactor. Biotechnol Prog. 2019 Feb 13: e2785. doi: 10.1002/btpr.2785. [Epub ahead of print] PubMed PMID: 30758910.

Crall JD, Switzer CM, Oppenheimer RL, Ford Versypt AN, Dey B, Brown A, Eyster M, Guérin C, Pierce NE, Combes SA, de Bivort BL. Neonicotinoid exposure disrupts bumblebee nest behavior, social networks, and thermoregulation. Science. 2018 Nov 9;362(6415):683-686. doi: 10.1126/science. aat1598. PubMed PMID: 30409882.

Pilvankar MR, Higgins MA, Ford Versypt AN. Mathematical Model for Glucose Dependence of the Local Renin-Angiotensin System in Podocytes. Bull Math Biol. 2018 Apr;80(4):880-905. doi: 10.1007/s11538-018-0408-4. Epub 2018 Mar 8. PubMed PMID: 29520569.

Ford Versypt AN, Makrides E, Arciero JC, Ellwein L, Layton AT. Bifurcation study of blood flow control in the kidney. Math Biosci. 2015 May; 263:169-79. doi: 10.1016/j.mbs.2015.02.015. Epub 2015 Mar 5. PubMed PMID: 25747903; PubMed Central PMCID: PMC4768488.

Irfan SA, Razali R, KuShaari K, Mansor N, Azeem B, Ford Versypt AN. A review of mathematical modeling and simulation of controlled-release fertilizers. J Control Release. 2018 Feb 10; 271:45-54. doi: 10.1016/j.jconrel.2017.12.017. Epub 2017 Dec 22. Review. PubMed PMID: 29274697.

Derakhshan T, Bhowmick R, Meinkoth JH, Ritchey J, Gappa-Fahlenkamp H. Human Mast Cell Development from Hematopoietic Stem Cells in a Connective Tissue-Equivalent Model. Tissue Eng Part A. 2019 Mar 21. doi: 10.1089/ten.TEA.2018.0347. [Epub ahead of print] PubMed PMID: 30896346.

Bhowmick R, Derakhshan T, Liang Y, Ritchey J, Liu L, Gappa-Fahlenkamp H. A Three-Dimensional Human Tissue-Engineered Lung Model to Study Influenza a Infection. Tissue Eng Part A. 2018 Oct;24(19-20):1468-1480. doi: 10.1089/ten.TEA.2017.0449. Epub 2018 Jun 29. PubMed PMID: 29732955; PubMed Central PMCID: PMC6198767.

Derakhshan T, Bhowmick R, Ritchey JW, Gappa-Fahlenkamp H. Development of Human Mast Cells from Hematopoietic Stem Cells within a 3D Collagen Matrix: Effect of Stem Cell Media on Mast Cell Generation. Stem Cells Int. 2018 Jul 11; 2018:2136193. doi: 10.1155/2018/2136193. eCollection 2018. PubMed PMID: 30123284; PubMed Central PMCID: PMC6079339.

Ibrahim M, Hatipoglu MK, Garcia-Contreras L. Cryogenic Fabrication of Dry Powders to Enhance the Solubility of a Promising Anticancer Drug, SHetA2, form Oral Administration. AAPS PharmSciTech. 2019 Jan 2;20(1):20. doi: 10.1208/s12249-018-1204-z. PubMed PMID: 30604109.

Mahjabeen S, Hatipoglu MK, Benbrook DM, Garcia-Contreras L. Pharmacokinetics and Pharmacodynamics of Escalating Doses of SHetA2 After Vaginal Administration to Mice. J Pharm Sci. 2018 Dec;107(12):3179-3186. doi: 10.1016/j.xphs.2018.08.024. Epub 2018 Sep 6. PubMed PMID: 30196041; PubMed Central PMCID: PMC6342475.

Kukut Hatipoglu M, Hickey AJ, Garcia-Contreras L. Pharmacokinetics and pharmacodynamics of high doses of inhaled dry powder drugs. Int J Pharm. 2018 Oct 5;549(1-2):306-316. doi: 10.1016/j.ijpharm.2018.07.050. Epub 2018 Aug 2. Review.  PubMed PMID: 30077761.

Mahjabeen S, Hatipoglu MK, Benbrook DM, Kosanke SD, Garcia-Contreras D, Garcia-Contreras L. Influence of the estrus cycle of the mouse on the disposition of SHetA2 after vaginal administration. Eur J Pharm Biopharm. 2018 Sep; 130:272-280. doi: 10.1016/j.ejpb.2018.07.004. Epub 2018 Jul 4. PubMed PMID: 30064701; PubMed Central PMCID: PMC6092953.

Youssef NH, Farag IF, Hahn CR, Jarett J, Becraft E, Eloe-Fadrosh E, Lightfoot J, Bourgeois A, Cole T, Ferrante S, Truelock M, Marsh W, Jamaleddine M, Ricketts S, Simpson R, McFadden A, Hoff W, Ravin NV, Sievert S, Stepanauskas R, Woyke T, Elshahed M. Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Appl Environ Microbiol. 2019 Mar 22. pii: AEM.00110-19. doi: 10.1128/AEM.00110-19. [Epub ahead of print] PubMed PMID: 30902854.

Youssef NH, Farag IF, Rudy S, Mulliner A, Walker K, Caldwell F, Miller M, Hoff W, Elshahed M. The Wood-Ljungdahl pathway as a key component of metabolic versatility in Candidate phylum Bipolaricaulota (Acetothermia, OP1). Environ Microbiol Rep. 2019 Mar 19. doi: 10.1111/1758-2229.12753. [Epub ahead of print] PubMed PMID: 30888727.

Youssef NH, Farag IF, Hahn CR, Premathilake H, Fry E, Hart M, Huffaker K, Bird E, Hambright J, Hoff WD, Elshahed MS. Candidatus Krumholzibacterium zodletonense gen. nov., sp nov, the first representative of the candidate phylum Krumholzibacteriota phyl. nov. recovered from an anoxic sulfidic spring using genome resolved metagenomics. Syst Appl Microbiol. 2019 Jan;42(1):85-93. doi: 10.1016/j.syapm.2018.11.002. Epub 2018 Nov 15. PubMed PMID: 30477901.

Haraguchi S, Shingae T, Fujisawa T, Kasai N, Kumauchi M, Hanamoto T, Hoff WD, Unno M. Spectroscopic ruler for measuring active-site distortions based on Raman optical activity of a hydrogen out-of-plane vibration. Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8671-8675. doi: 10.1073/pnas.1806491115. Epub 2018 Aug 13. PubMed PMID: 30104345; PubMed Central PMCID: PMC6126711.

Parriman M, Campolo A, Waller AP, Lacombe VA. Adverse Metabolic Effects of Diltiazem Treatment During Diabetic Cardiomyopathy. J Cardiovasc Pharmacol Ther.  2018 Nov 20:1074248418808392. doi: 10.1177/1074248418808392. [Epub ahead of print] PubMed PMID: 30458627.

Patil G, Zhao M, Song K, Hao W, Bouchereau D, Wang L, Li S. TRIM41-Mediated Ubiquitination of Nucleoprotein Limits Influenza A Virus Infection. J Virol. 2018 Jul 31;92(16). pii: e00905-18. doi: 10.1128/JVI.00905-18. Print 2018 Aug 15. PubMed PMID: 29899090; PubMed Central PMCID: PMC6069172.

Li S, Li J, Mao G, Wu T, Lin D, Hu Y, Ye X, Tian D, Chai W, Linhardt RJ, Chen S. Fucosylated chondroitin sulfate from Isostichopus badionotus alleviates metabolic syndromes and gut microbiota dysbiosis induced by high-fat and high-fructose diet. Int J Biol Macromol. 2019 Mar 1; 124:377-388. doi: 10.1016/j.ijbiomac.2018.11.167. Epub 2018 Nov 19. PubMed PMID: 30465844.

Shaw JH, Key CE, Snider TA, Sah P, Shaw EI, Fisher DJ, Lutter EI. Genetic Inactivation of Chlamydia Trachomatis Inclusion Membrane Protein CT228 Alters MYPT1 Recruitment, Extrusion Production, and Longevity of Infection. Front Cell Infect Microbiol. 2018 Nov 30; 8:415. doi: 10.3389/fcimb.2018.00415. eCollection 2018. PubMed PMID: 30555802; PubMed Central PMCID: PMC6284022.

George Z, Omosun Y, Azenabor AA, Goldstein J, Partin J, Joseph K, Ellerson D, He Q, Eko F, McDonald MA, Reed M, Svoboda P, Stuchlik O, Pohl J, Lutter E, Bandea C, Black CM, Igietseme JU. The molecular mechanism of induction of unfolded protein response by Chlamydia. Biochem Biophys Res Commun. 2019 Jan 8;508(2):421-429. doi: 10.1016/j.bbrc.2018.11.034. Epub 2018 Nov 28. PubMed PMID: 30503337; PubMed Central PMCID: PMC6343654.

Willis EL, Stevens TL, White GL, Mcfarlane D. Characterization of Baboon Cytomegalovirus Infection in Healthy Adult Baboons (Papio anubis). Comp Med. 2019 Feb 1;69(1):55-62. doi: 10.30802/AALAS-CM-18-000050. Epub 2019 Jan 31. PubMed PMID: 30704552; PubMed Central PMCID: PMC6382043.

McCullor K, Postoak B, Rahman M, King C, McShan WM. Genomic Sequencing of High-Efficiency Transducing Streptococcal Bacteriophage A25: Consequences of Escape from Lysogeny. J Bacteriol. 2018 Nov 6;200(23). pii: e00358-18. doi: 10.1128/JB.00358-18. Print 2018 Dec 1. PubMed PMID: 30224437; PubMed Central PMCID: PMC6222204.

Platzer K, Sticht H, Edwards SL, Allen W, Angione KM, Bonati MT, Brasington C, Cho MT, Demmer LA, Falik-Zaccai T, Gamble CN, Hellenbroich Y, Iascone M, Kok F, Mahida S, Mandel H, Marquardt T, McWalter K, Panis B, Pepler A, Pinz H, Ramos L, Shinde DN, Smith-Hicks C, Stegmann APA, Stöbe P, Stumpel CTRM, Wilson C, Lemke JR, Di Donato N, Miller KG, Jamra R. De Novo Variants in MAPK8IP3 Cause Intellectual Disability with Variable Brain Anomalies. Am J Hum Genet. 2019 Feb 7;104(2):203-212. doi: 10.1016/j.ajhg.2018.12.008. Epub 2019 Jan 3. PubMed PMID:  30612693; PubMed Central PMCID: PMC6369540.

Edwards SL, Morrison LM, Manning L, Stec N, Richmond JE, Miller KG. Sentryn Acts with a Subset of Active Zone Proteins to Optimize the Localization of Synaptic Vesicles in Caenorhabditis elegans. Genetics. 2018 Nov;210(3):947-968. doi: 10.1534/genetics.118.301466. PubMed PMID: 30401765; PubMed Central PMCID: PMC6218225.

Morrison LM, Edwards SL, Manning L, Stec N, Richmond JE, Miller KG. Sentryn and SAD Kinase Link the Guided Transport and Capture of Dense Core Vesicles in Caenorhabditis elegans. Genetics. 2018 Nov;210(3):925-946. doi: 10.1534/genetics.118.300847. PubMed PMID: 30401764; PubMed Central PMCID: PMC6218223.

Harterink M, Edwards SL, de Haan B, Yau KW, van den Heuvel S, Kapitein LC, Miller KG, Hoogenraad CC. Local microtubule organization promotes cargo transport in C. elegans dendrites. J Cell Sci. 2018 Oct 22;131(20). pii: jcs223107. doi: 10.1242/jcs.223107. PubMed PMID: 30254025; PubMed Central PMCID: PMC6215390.

Murray AB, Aggarwal M, Pinard M, Vullo D, Patrauchan M, Supuran CT, McKenna R. Structural Mapping of Anion Inhibitors to β-Carbonic Anhydrase psCA3 from Pseudomonas aeruginosa. ChemMedChem. 2018 Oct 8;13(19):2024-2029. doi: 10.1002/cmdc.201800375. Epub 2018 Sep 13. PubMed PMID: 30088334.

Ektate K, Munteanu MC, Ashar H, Malayer J, Ranjan A. Chemo-immunotherapy of colon cancer with focused ultrasound and Salmonella-laden temperature sensitive liposomes (thermobots). Sci Rep. 2018 Aug 30;8(1):13062. doi: 10.1038/s41598-018-30106-4. PubMed PMID: 30166607; PubMed Central PMCID: PMC6117346.

Liu C, Kapoor A, VanOsdol J, Ektate K, Kong Z, Ranjan A. A Spectral Fiedler Field-based Contrast Platform for Imaging of Nanoparticles in Colon Tumor. Sci Rep. 2018 Jul 30;8(1):11390. doi: 10.1038/s41598-018-29675-1. PubMed PMID: 30061558; PubMed Central PMCID: PMC6065424. Rybenkov, Valentin, CAS, OU

Schroeder SJ. Challenges and approaches to predicting RNA with multiple functional structures. RNA. 2018 Dec;24(12):1615-1624. doi: 10.1261/rna.067827.118. Epub 2018 Aug 24. Review. PubMed PMID: 30143552; PubMed Central PMCID: PMC6239171.

Shaw JH, Key CE, Snider TA, Sah P, Shaw EI, Fisher DJ, Lutter EI. Genetic Inactivation of Chlamydia Trachomatis Inclusion Membrane Protein CT228 Alters MYPT1 Recruitment, Extrusion Production, and Longevity of Infection. Front Cell Infect Microbiol. 2018 Nov 30; 8:415. doi: 10.3389/fcimb.2018.00415. eCollectionm 2018. PubMed PMID: 30555802; PubMed Central PMCID: PMC6284022.

Shaw EI, Voth DE. Coxiella burnetii: A Pathogenic Intracellular Acidophile. Microbiology. 2019 Jan;165(1):1-3. doi: 10.1099/mic.0.000707. Epub 2018 Nov 13. PubMed PMID: 30422108.

Shaw JH, Key CE, Snider TA, Sah P, Shaw EI, Fisher DJ, Lutter EI. Genetic Inactivation of Chlamydia Trachomatis Inclusion Membrane Protein CT228 Alters MYPT1 Recruitment, Extrusion Production, and Longevity of Infection. Front Cell Infect Microbiol. 2018 Nov 30; 8:415. doi: 10.3389/fcimb.2018.00415. eCollection 2018. PubMed PMID: 30555802; PubMed Central PMCID: PMC6284022.

Brewer SM, Wilson KR, Jones DG, Reinheimer EW, Archibald SJ, Prior TJ, Ayala MA, Foster AL, Hubin TJ, Green KN. Increase of Direct C-C Coupling Reaction Yield by Identifying Structural and Electronic Properties of High-Spin Iron Tetra-azamacrocyclic Complexes. Inorg Chem. 2018 Aug 6;57(15):8890-8902. doi: 10.1021/acs.inorgchem.8b00777. Epub 2018 Jul 19. PubMed PMID: 30024738.

Youssef NH, Farag IF, Hahn CR, Jarett J, Becraft E, Eloe-Fadrosh E, Lightfoot J, Bourgeois A, Cole T, Ferrante S, Truelock M, Marsh W, Jamaleddine M, Ricketts S, Simpson R, McFadden A, Hoff W, Ravin NV, Sievert S, Stepanauskas R, Woyke T, Elshahed M. Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Appl Environ Microbiol. 2019 Mar 22. pii: AEM.00110-19. doi: 10.1128/AEM.00110-19. [Epub ahead of print] PubMed PMID: 30902854.

Youssef NH, Farag IF, Rudy S, Mulliner A, Walker K, Caldwell F, Miller M, Hoff W, Elshahed M. The Wood-Ljungdahl pathway as a key component of metabolic versatility in Candidate phylum Bipolaricaulota (Acetothermia, OP1). Environ Microbiol Rep. 2019 Mar 19. doi: 10.1111/1758-2229.12753. [Epub ahead of print] PubMed PMID: 30888727.

Youssef NH, Farag IF, Hahn CR, Premathilake H, Fry E, Hart M, Huffaker K, Bird E, Hambright J, Hoff WD, Elshahed MS. Candidatus Krumholzibacterium zodletonense gen. nov., sp nov, the first representative of the candidate phylum Krumholzibacteriota phyl. nov. recovered from an anoxic sulfidic spring using genome resolved metagenomics. Syst Appl Microbiol. 2019 Jan;42(1):85-93. doi: 10.1016/j.syapm.2018.11.002. Epub 2018 Nov 15. PubMed PMID: 30477901.

Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). ISME J. 2019 Mar;13(3):663-675. doi: 10.1038/s41396-018-0282-y. Epub 2018 Oct 15. PubMed PMID: 30323263.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q. Revisions to the Classification,  Nomenclature, and Diversity of Eukaryotes. J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691. PubMed PMID: 30257078.

Hanafy RA, El shahed MS, Youssef NH. Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer. Mycologia. 2018 May-Jun;110(3):513-525. doi: 10.1080/00275514.2018.1466610. Epub 2018 Jul 3. PubMed PMID: 29969376.

Hanafy RA, Johnson B, Elshahed MS, Youssef NH. Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat. Mycologia. 2018 May-Jun;110(3):502-512. doi: 10.1080/00275514.2018.1465773. Epub 2018 Jun 26. PubMed PMID: 29944464.