Publications July 1, 2013 - June 30, 2014
- Project/Pilot Project Leaders
Ramani V, Madhusoodhanan R, Kosanke S, Awasthi S. A TLR4-interacting SPA4 peptide inhibits LPS-induced lung inflammation. Innate Immun. 2013 Dec;19(6):596-610. doi: 10.1177/1753425912474851. Epub 2013 Mar 8. PubMed PMID: 23475791.
Vilekar P, King C, Lagisetty P, Awasthi V, Awasthi S. Antibacterial activity of synthetic curcumin derivatives: 3,5-bis(benzylidene)-4-piperidone (EF24) and EF24-dimer linked via diethylenetriaminepentacetic acid (EF2DTPA). Appl Biochem Biotechnol. 2014 Apr;172(7):3363-73. doi: 10.1007/s12010-014-0741-5. Epub 2014 Feb 15. PubMed PMID: 24532443.
Baviskar PS, Hotard AL, Moore ML, Oomens AG. The respiratory syncytial virus fusion protein targets to the perimeter of inclusion bodies and facilitates filament formation by a cytoplasmic tail-dependent mechanism. J Virol. 2013 Oct;87(19):10730-41. doi: 10.1128/JVI.03086-12. Epub 2013 Jul 31. PubMed PMID: 23903836; PubMed Central PMCID: PMC3807408.
Chirkova T, Boyoglu-Barnum S, Gaston KA, Malik FM, Trau SP, Oomens AG, Anderson LJ. Respiratory syncytial virus G protein CX3C motif impairs human airway epithelial and immune cell responses. J Virol. 2013 Dec;87(24):13466-79. doi: 10.1128/JVI.01741-13. Epub 2013 Oct 2. PubMed PMID: 24089561; PubMed Central PMCID: PMC3838285.
Zhang B, Liu C, Qian W, Han Y, Li X, Deng J. Structure of the unique SEFIR domain from human interleukin 17 receptor A reveals a composite ligand-binding site containing a conserved α-helix for Act1 binding and IL-17 signaling. Acta Crystallogr D Biol Crystallogr. 2014 May;70(Pt 5):1476-83. doi: 10.1107/S1399004714005227. Epub 2014 Apr 30. PubMed PMID: 24816115; PubMed Central PMCID: PMC4014126.
Krumm B, Xiang Y, Deng J. Structural biology of the IL-1 superfamily: key cytokines in the regulation of immune and inflammatory responses. Protein Sci. 2014 May;23(5):526-38. doi: 10.1002/pro.2441. Epub 2014 Mar 4. Review. PubMed PMID: 24677376; PubMed Central PMCID: PMC4005705.
Kaledhonkar S, Hara M, Stalcup TP, Xie A, Hoff WD. Strong ionic hydrogen bonding causes a spectral isotope effect in photoactive yellow protein. Biophys J. 2013 Dec 3;105(11):2577-85. doi: 10.1016/j.bpj.2013.10.017. PubMed PMID: 24314088; PubMed Central PMCID: PMC3853077.
Creelman M, Kumauchi M, Hoff WD, Mathies RA. Chromophore dynamics in the PYP photocycle from femtosecond stimulated Raman spectroscopy. J Phys Chem B. 2014 Jan 23;118(3):659-67. doi: 10.1021/jp408584v. Epub 2014 Jan 10. PubMed PMID: 24451027.
Youssef NH, Savage-Ashlock KN, McCully AL, Luedtke B, Shaw EI, Hoff WD, Elshahed MS. Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales. ISME J. 2014 Mar;8(3):636-49. doi: 10.1038/ismej.2013.165. Epub 2013 Sep 19. PubMed PMID: 24048226; PubMed Central PMCID: PMC3930309.
Morrison JM, John GH. The non-enzymatic reduction of azo dyes by flavin and nicotinamide cofactors under varying conditions. Anaerobe. 2013 Oct;23:87-96. doi: 10.1016/j.anaerobe.2013.07.005. Epub 2013 Jul 26. PubMed PMID: 23891960.
Morrison J, Dai S, Ren J, Taylor A, Wilkerson M, John G, Xie A. Structure and stability of an azoreductase with an FAD cofactor from the strict anaerobe Clostridium perfringens. Protein Pept Lett. 2014 Jun;21(6):523-34. PubMed PMID: 24779771.
Senavirathna LK, Fernando R, Maples D, Zheng Y, Polf JC, Ranjan A. Tumor Spheroids as an in vitro model for determining the therapeutic response to proton beam radiotherapy and thermally sensitive nanocarriers. Theranostics. 2013 Aug 21;3(9):687-91. doi: 10.7150/thno.6381. eCollection 2013. PubMed PMID: 24019853; PubMed Central PMCID: PMC3767115.
Fernando R, Downs J, Maples D, Ranjan A. MRI-guided monitoring of thermal dose and targeted drug delivery for cancer therapy. Pharm Res. 2013 Nov;30(11):2709-17. doi: 10.1007/s11095-013-1110-8. Epub 2013 Jun 19. Review. PubMed PMID: 23780716.
Edwards AL, Sangurdekar DP, Jeong KS, Khodursky AB, Rybenkov VV. Transient growth arrest in Escherichia coli induced by chromosome condensation. PLoS One. 2013 Dec 23;8(12):e84027. doi: 10.1371/journal.pone.0084027. eCollection 2013. PubMed PMID: 24376785; PubMed Central PMCID: PMC3871593.
Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS. The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. Appl Environ Microbiol. 2013 Aug;79(15):4620-34. doi: 10.1128/AEM.00821-13. Epub 2013 May 24. PubMed PMID: 23709508; PubMed Central PMCID: PMC3719515.
Farag IF, Davis JP, Youssef NH, Elshahed MS. Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). PLoS One. 2014 Mar 17;9(3):e92139. doi: 10.1371/journal.pone.0092139. eCollection 2014. PubMed PMID: 24637619; PubMed Central PMCID: PMC3956909.
- Mentors/Core Directors
Tappert MM, Porterfield JZ, Mehta-D'Souza P, Gulati S, Air GM. Quantitative comparison of human parainfluenza virus hemagglutinin-neuraminidase receptor binding and receptor cleavage. J Virol. 2013 Aug;87(16):8962-70. doi: 10.1128/JVI.00739-13. Epub 2013 Jun 5. PubMed PMID: 23740997; PubMed Central PMCID: PMC3754076.
Gulati S, Lasanajak Y, Smith DF, Cummings RD, Air GM. Glycan array analysis of influenza H1N1 binding and release. Cancer Biomark. 2014 Jan 1;14(1):43-53. doi: 10.3233/CBM-130376. PubMed PMID: 24643041; PubMed Central PMCID: PMC4161021.
Sun D, Popescu NI, Raisley B, Keshari RS, Dale GL, Lupu F, Coggeshall KM. Bacillus anthracis peptidoglycan activates human platelets through FcγRII and complement. Blood. 2013 Jul 25;122(4):571-9. doi: 10.1182/blood-2013-02-486613. Epub 2013 Jun 3. PubMed PMID: 23733338; PubMed Central PMCID: PMC3724192.
An JH, Kurokawa K, Jung DJ, Kim MJ, Kim CH, Fujimoto Y, Fukase K, Coggeshall KM, Lee BL. Human SAP is a novel peptidoglycan recognition protein that induces complement-independent phagocytosis of Staphylococcus aureus. J Immunol. 2013 Sep 15;191(6):3319-27. doi: 10.4049/jimmunol.1300940. Epub 2013 Aug 21. PubMed PMID: 23966633; PubMed Central PMCID: PMC4277995.
Barua S, Iyer JK, Larabee JL, Raisley B, Hughes MA, Coggeshall KM, Ballard JD. Toxin inhibition of antimicrobial factors induced by Bacillus anthracis peptidoglycan in human blood. Infect Immun. 2013 Oct;81(10):3693-702. doi: 10.1128/IAI.00709-13. Epub 2013 Jul 22. PubMed PMID: 23876807; PubMed Central PMCID: PMC3811742.
Lupu F, Keshari RS, Lambris JD, Coggeshall KM. Crosstalk between the coagulation and complement systems in sepsis. Thromb Res. 2014 May;133 Suppl 1:S28-31. doi: 10.1016/j.thromres.2014.03.014. Review. PubMed PMID: 24759136; PubMed Central PMCID: PMC4154483.
Coggeshall KM, Lupu F, Ballard J, Metcalf JP, James JA, Farris D, Kurosawa S. The sepsis model: an emerging hypothesis for the lethality of inhalation anthrax. J Cell Mol Med. 2013 Jul;17(7):914-20. doi: 10.1111/jcmm.12075. Epub 2013 Jun 7. PubMed PMID: 23742651; PubMed Central PMCID: PMC3729634.
Kang K, Peng X, Zhang X, Wang Y, Zhang L, Gao L, Weng T, Zhang H, Ramchandran R, Raj JU, Gou D, Liu L. MicroRNA-124 suppresses the transactivation of nuclear factor of activated T cells by targeting multiple genes and inhibits the proliferation of pulmonary artery smooth muscle cells. J Biol Chem. 2013 Aug 30;288(35):25414-27. doi: 10.1074/jbc.M113.460287. Epub 2013 Jul 12. PubMed PMID: 23853098; PubMed Central PMCID: PMC3757204.
Guo Y, Mishra A, Weng T, Chintagari NR, Wang Y, Zhao C, Huang C, Liu L. Wnt3a mitigates acute lung injury by reducing P2X7 receptor-mediated alveolar epithelial type I cell death. Cell Death Dis. 2014 Jun 12;5:e1286. doi: 10.1038/cddis.2014.254. PubMed PMID: 24922070.
Weintraub NL, Metcalf JP. The Central Society for Clinical and Translational Research: more than just a name change. Transl Res. 2013 Sep;162(3):201-2. doi: 10.1016/j.trsl.2013.07.001. Epub 2013 Jul 13. PubMed PMID: 23859990.
Wu W, Awab A, Metcalf JP. N-Acetylcysteine Protection in COPD: An Alternative Mechanism of Action.Chest. 2014 Jan;145(1):193-4. doi: 10.1378/chest.13-2029. PubMed PMID: 24394845.
- Center Investigators
Simpson KM, Streeter RN, Wall CR, Sula MJ, Breshears MA. What is your diagnosis? Chronic urethral trauma secondary to urolithiasis. J Am Vet Med Assoc. 2013 Nov 15;243(10):1395-7. doi: 10.2460/javma.243.10.1395. PubMed PMID: 24171366
Layman QD, Rezabek GB, Ramachandran A, Love BC, Confer AW. A retrospective study of equine actinobacillosis cases: 1999-2011. J Vet Diagn Invest. 2014 Apr 17;26(3):365-375. [Epub ahead of print] PubMed PMID: 24742921.
Kishida M, Ford Versypt AN, Pack DW, Braatz RD. Optimal Control of One-dimensional Cellular Uptake in Tissue Engineering. Optim Control Appl Methods. 2013 Nov;34(6):680-695. PubMed PMID: 24634549; PubMed Central PMCID: PMC3952945.
May NA, Wang Q, Balbo A, Konrad SL, Buchli R, Hildebrand WH, Schuck P, Hudson AW. Human herpesvirus 7 U21 tetramerizes to associate with class I major histocompatibility complex molecules. J Virol. 2014 Mar;88(6):3298-308. doi: 10.1128/JVI.02639-13. Epub 2014 Jan 3. PubMed PMID: 24390327; PubMed Central PMCID: PMC3957921.
McMurtrey C, Lowe D, Buchli R, Daga S, Royer D, Humphrey A, Cate S, Osborn S, Mojsilovic A, VanGundy R, Bardet W, Duty A, Mojsilovic D, Jackson K, Stastny P, Briggs D, Zehnder D, Higgins R, Hildebrand W. Profiling antibodies to class II HLA in transplant patient sera. Hum Immunol. 2014 Mar;75(3):261-70. doi: 10.1016/j.humimm.2013.11.015. Epub 2013 Nov 20. PubMed PMID: 24269696.
Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H. Identification of conserved and novel microRNAs in Manduca sexta and their possible roles in the expression regulation of immunity-related genes. Insect Biochem Mol Biol. 2014 Apr;47:12-22. doi: 10.1016/j.ibmb.2014.01.008. Epub 2014 Feb 5. PubMed PMID: 24508515; PubMed Central PMCID: PMC3992939.
Hu T, Wang H, Simmons A, Bajaña S, Zhao Y, Kovats S, Sun XH, Alberola-Ila J. Increased level of E protein activity during invariant NKT development promotes differentiation of invariant NKT2 and invariant NKT17 subsets. J Immunol. 2013 Nov 15;191(10):5065-73. doi: 10.4049/jimmunol.1301546. Epub 2013 Oct 11. PubMed PMID: 24123679; PubMed Central PMCID: PMC3832958.
Carreras E, Kovats S. Girl power: estrogen promotes HSC self-renewal. Cell Stem Cell. 2014 Feb 6;14(2):137-8. doi: 10.1016/j.stem.2014.01.016. PubMed PMID: 24506879; PubMed Central PMCID: PMC3974548.
Singh V, Krishnan S. An electrochemical mass sensor for diagnosing diabetes in human serum. Analyst. 2014 Feb 21;139(4):724-8. doi: 10.1039/c3an01542d. PubMed PMID: 24384604.
Liu J, Parsons L, Pope C. Comparative effects of parathion and chlorpyrifos on extracellular endocannabinoid levels in rat hippocampus: influence on cholinergic toxicity. Toxicol Appl Pharmacol. 2013 Nov 1;272(3):608-15. doi: 10.1016/j.taap.2013.07.025. Epub 2013 Aug 7. PubMed PMID: 23933531; PubMed Central PMCID: PMC3831619.
Jagadeeswaran G, Li YF, Sunkar R. Redox signaling mediates the expression of a sulfate-deprivation-inducible microRNA395 in Arabidopsis. Plant J. 2014 Jan;77(1):85-96. doi: 10.1111/tpj.12364. Epub 2013 Nov 29. PubMed PMID: 24164591.
Bergstrom KS, Xia L. Mucin-type O-glycans and their roles in intestinal homeostasis. Glycobiology. 2013 Sep;23(9):1026-37. doi: 10.1093/glycob/cwt045. Epub 2013 Jun 10. Review. PubMed PMID: 23752712; PubMed Central PMCID: PMC3858029.
Herzog BH, Fu J, Wilson SJ, Hess PR, Sen A, McDaniel JM, Pan Y, Sheng M, Yago T, Silasi-Mansat R, McGee S, May F, Nieswandt B, Morris AJ, Lupu F, Coughlin SR, McEver RP, Chen H, Kahn ML, Xia L. Podoplanin maintains high endothelial venule integrity by interacting with platelet CLEC-2. Nature. 2013 Oct 3;502(7469):105-9. doi: 10.1038/nature12501. Epub 2013 Sep 1. PubMed PMID: 23995678; PubMed Central PMCID: PMC3791160.
Song K, Herzog BH, Sheng M, Fu J, McDaniel JM, Chen H, Ruan J, Xia L. Lenalidomide inhibits lymphangiogenesis in preclinical models of mantle cell lymphoma. Cancer Res. 2013 Dec 15;73(24):7254-64. doi: 10.1158/0008-5472.CAN-13-0750. Epub 2013 Oct 24. Erratum in: Cancer Res. 2014 Feb 15;74(4):1284. Chen, Hong [added]. PubMed PMID: 24158094; PubMed Central PMCID: PMC3947537.
Sommer F, Adam N, Johansson ME, Xia L, Hansson GC, Bäckhed F. Altered mucus glycosylation in core 1 O-glycan-deficient mice affects microbiota composition and intestinal architecture. PLoS One. 2014 Jan 9;9(1):e85254. doi: 10.1371/journal.pone.0085254. eCollection 2014. PubMed PMID: 24416370; PubMed Central PMCID: PMC3887012.
Tessneer KL, Pasula S, Cai X, Dong Y, McManus J, Liu X, Yu L, Hahn S, Chang B, Chen Y, Griffin C, Xia L, Adams RH, Chen H. Genetic reduction of vascular endothelial growth factor receptor 2 rescues aberrant angiogenesis caused by epsin deficiency. Arterioscler Thromb Vasc Biol. 2014 Feb;34(2):331-7. doi: 10.1161/ATVBAHA.113.302586. Epub 2013 Dec 5. Erratum in: Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):e7. PubMed PMID: 24311377; PubMed Central PMCID: PMC3920663.
Perez-Muñoz ME, Bergstrom K, Peng V, Schmaltz R, Jimenez-Cardona R, Marsteller N, McGee S, Clavel T, Ley R, Fu J, Xia L, Peterson DA. Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis. Gut Microbes. 2014 May-Jun;5(3):286-95. doi: 10.4161/gmic.28622. Epub 2014 Mar 24. PubMed PMID: 24662098; PubMed Central PMCID: PMC4153765.
Shi J, Gao L, Zhu Y, Chen T, Liu Y, Dong L, Liu F, Yang H, Cai Y, Yu M, Yao Y, Xu C, Xiao X, Shu Y.Investigation of avian influenza infections in wild birds, poultry and humans in Eastern Dongting Lake, China. PLoS One. 2014 Apr 22;9(4):e95685. doi: 10.1371/journal.pone.0095685. eCollection 2014. PubMed PMID: 24755911; PubMed Central PMCID: PMC3995770.
Dong J, Xiao X, Sheldon S, Biradar C, Zhang G, Duong ND, Hazarika M, Wikantika K, Takeuhci W, Moore B 3rd. A 50-m forest cover map in Southeast Asia from ALOS/PALSAR and its application on forest fragmentation assessment. PLoS One. 2014 Jan 22;9(1):e85801. doi: 10.1371/journal.pone.0085801. eCollection 2014. PubMed PMID: 24465714; PubMed Central PMCID: PMC3899076.
Gilbert M, Golding N, Zhou H, Wint GR, Robinson TP, Tatem AJ, Lai S, Zhou S, Jiang H, Guo D, Huang Z, Messina JP, Xiao X, Linard C, Van Boeckel TP, Martin V, Bhatt S, Gething PW, Farrar JJ, Hay SI, Yu H. Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia. Nat Commun. 2014 Jun 17;5:4116. doi: 10.1038/ncomms5116. PubMed PMID: 24937647; PubMed Central PMCID: PMC4061699.,