Publications July 1, 2022 - June 30, 2023
- Project/Pilot Project Leaders
- Davis MS, Barrett MR. High-Resolution Fluoro-Respirometry of Equine Skeletal Muscle. J Vis Exp. 023 Feb 3;(192). doi: 10.3791/65075. PMID: 36806116.
- Abisado-Duque RG, Mckee BM, Townsend KA, Woods K, Holder AJ, Craddock VD, Cabeen M, Chandler JR. Tobramycin adaptation alters the antibiotic susceptibility of <i>Pseudomonas aeruginosa</i> quorum sensing-null mutants. bioRxiv [Preprint]. 2023 Jan 18:2023.01.13.523864. doi: 10.1101/2023.01.13.523864. PMID: 36711731; PMCID: PMC9882136.
- Hayati H, Feng Y, Chen X, Kolewe E, Fromen C. Prediction of transport, deposition, and resultant immune response of nasal spray vaccine droplets using a CFPD-HCD model in a 6-year-old upper airway geometry to potentially prevent COVID-19. Exp Comput Multiph Flow. 2023 Jan 19:1-18. doi: 1007/s42757-022-0145-7. Epub ahead of print. PMID: 36694695; PMCID: PMC9851113.
- Hamm CW, Butler DR, Cabeen MT. Bacillus subtilis Stressosome Sensor Protein Sequences Govern the Ability To Distinguish among Environmental Stressors and Elicit Different σ<sup>B</sup> Response Profiles. mBio. 2022 Dec 20;13(6):e0200122. doi: 10.1128/mbio.02001-22. Epub 2022 Nov 21. PMID: 36409125; PMCID: PMC9765535.
- Hayati H, Feng Y, Chen X, Kolewe E, Fromen C. Prediction of Transport, Deposition, and Resultant Immune Response of Nasal Spray Vaccine Droplets using a CFPD-HCD Model in a 6-Year-Old Upper Airway Geometry to Potentially Prevent COVID-19. bioRxiv [Preprint]. 2022 Nov 8:2022.11.08.515673. doi: 10.1101/2022.11.08.515673. Update in: Exp Comput Multiph Flow. 2023 Jan 19;:1-18. PMID: 36380758; PMCID: PMC9665335.
- Underhill SAM, Cabeen MT. Redundancy in Citrate and <i>cis</i>-Aconitate Transport in <i>Pseudomonas aeruginosa</i>. J Bacteriol. 2022 Dec 20;204(12):e0028422. doi: 10.1128/jb.00284-22. Epub 2022 Nov 2. PMID: 36321838; PMCID: PMC9765132.
- Keller TCS 4th, Lechauve C, Keller AS, Broseghini-Filho GB, Butcher JT, Askew Page HR, Islam A, Tan ZY, DeLalio LJ, Brooks S, Sharma P, Hong K, Xu W, Padilha AS, Ruddiman CA, Best AK, Macal E, Kim-Shapiro DB, Christ G, Yan Z, Cortese-Krott MM, Ricart K, Patel R, Bender TP, Sonkusare SK, Weiss MJ, Ackerman H, Columbus L, Isakson BE. Endothelial alpha globin is a nitrite reductase. Nat Commun. 2022 Oct 27;13(1):6405. doi: 10.1038/s41467-022-34154-3. PMID: 36302779; PMCID: PMC9613979.
- Do T, Synan L, Ali G, Gappa-Fahlenkamp H. 3D tissue-engineered lung models to study immune responses following viral infections of the small airways. Stem Cell Res Ther. 2022 Sep 7;13(1):464. doi: 10.1186/s13287-022-03134-1. PMID: 36071442; PMCID: PMC9449944.
- Larion S, Padgett CA, Butcher JT, Mintz JD, Fulton DJ, Stepp DW. The biological clock enhancer nobiletin ameliorates steatosis in genetically obese mice by restoring aberrant hepatic circadian rhythm. Am J Physiol Gastrointest Liver Physiol. 2022 Oct 1;323(4):G387-G400. doi: 10.1152/ajpgi.00130.2022. Epub 2022 Aug 23. PMID: 35997288; PMCID: PMC9602907.
- Halvorson BD, Menon NJ, Goldman D, Frisbee SJ, Goodwill AG, Butcher JT, Stapleton PA, Brooks SD, d'Audiffret AC, Wiseman RW, Lombard JH, Brock RW, Olfert IM, Chantler PD, Frisbee JC. The development of peripheral microvasculopathy with chronic metabolic disease in obese Zucker rats: a retrograde emergence? Am J Physiol Heart Circ Physiol. 2022 Sep 1;323(3):H475-H489. doi: 10.1152/ajpheart.00264.2022. Epub 2022 Jul 29. PMID: 35904886; PMCID: PMC9448278.
- Bronson AS, Baggett NS, Cabeen MT. DNA Damage-Inducible Pyocin Expression Is Independent of RecA in <i>xerC</i>-Deleted Pseudomonas aeruginosa. Microbiol Spectr. 2022 Aug 31;10(4):e0116722. doi: 10.1128/spectrum.01167-22. Epub 2022 Jun 16. PMID: 35708338; PMCID: PMC9431673.
- Smith AP, Williams EP, Plunkett TR, Selvaraj M, Lane LC, Zalduondo L, Xue Y, Vogel P, Channappanavar R, Jonsson CB, Smith AM. Time-Dependent Increase in Susceptibility and Severity of Secondary Bacterial Infections During SARS-CoV-2. Front Immunol. 2022 May 12;13:894534. doi: 10.3389/fimmu.2022.894534. PMID: 35634338; PMCID: PMC9134015.
- Kayastha BB, Kubo A, Burch-Konda J, Dohmen RL, McCoy JL, Rogers RR, Mares S, Bevere J, Huckaby A, Witt W, Peng S, Chaudhary B, Mohanty S, Barbier M, Cook G, Deng J, Patrauchan MA. EF-hand protein, EfhP, specifically binds Ca<sup>2+</sup> and mediates Ca<sup>2+</sup> regulation of virulence in a human pathogen Pseudomonas aeruginosa. Sci Rep. 2022 May 25;12(1):8791. doi: 10.1038/s41598-022-12584-9. PMID: 35614085; PMCID: PMC9132961.
- Padgett CA, Butcher JT, Haigh SB, Speese AC, Corley ZL, Rosewater CL, Sellers HG, Larion S, Mintz JD, Fulton DJR, Stepp DW. Obesity Induces Disruption of Microvascular Endothelial Circadian Rhythm. Front Physiol. 2022 May 5;13:887559. doi: 10.3389/fphys.2022.887559. PMID: 35600313; PMCID: PMC9119407.
- Dijkman R, Verma AK, Selvaraj M, Ghimire R, Gad HH, Hartmann R, More S, Perlman S, Thiel V, Channappanavar R. Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice. J Virol. 2022 Jun 8;96(11):e0036422. doi: 10.1128/jvi.00364-22. Epub 2022 May 19. PMID: 35588276; PMCID: PMC9175626.
- Channappanavar R, Selvaraj M, More S, Perlman S. Alveolar macrophages protect mice from MERS-CoV-induced pneumonia and severe disease. Vet Pathol. 2022 Jul;59(4):627-638. doi: 10.1177/03009858221095270. Epub 2022 May 2. PMID: 35499307.
- Channappanavar R. Interferons in coronavirus pathogenesis: The good, the bad, and the ugly. Cell Host Microbe. 2022 Apr 13;30(4):427-430. doi: 10.1016/j.chom.2022.03.022. PMID: 35421336; PMCID: PMC9006388.
- Shaw JH, Key CE, Snider TA, Sah P, Shaw EI, Fisher DJ, Lutter EI. Corrigendum: Genetic inactivation of <i>Chlamydia trachomatis</i> inclusion membrane protein CT228 alters MYPT1 recruitment, extrusion production, and longevity of infection. Front Cell Infect Microbiol. 2023 Feb 14;12:1075768. doi: 10.3389/fcimb.2022.1075768. Erratum for: Front Cell Infect Microbiol. 2018 Nov 30;8:415. PMID: 36865595; PMCID: PMC9974148.
- Alake SE, Lightfoot S, Wozniak K, Lin D, Chowanadisai W, Smith BJ, Lucas EA. Wheat Germ Supplementation Reduces Inflammation and Gut Epithelial Barrier Dysfunction in Female Interleukin-10 Knockout Mice Fed a Pro-Atherogenic Diet. J Nutr. 2023 Jan 9:S0022-3166(23)02510-5. doi: 10.1016/j.tjnut.2023.01.008. Epub ahead of print. PMID: 36813578.
- Sankey N, Merrick H, Singh P, Rogers J, Reddi A, Hartson SD, Mitra A. Role of the Mycobacterium tuberculosis ESX-4 Secretion System in Heme Iron Utilization and Pore Formation by PPE Proteins. mSphere. 2023 Feb 7:e0057322. doi: 10.1128/msphere.00573-22. Epub ahead of print. PMID: 36749044.
- van der Gulik PTS, Egas M, Kraaijeveld K, Dombrowski N, Groot AT, Spang A, Hoff WD, Gallie J. On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes. RNA Biol. 2023 Jan;20(1):48-58. doi: 10.1080/15476286.2023.2172370. PMID: 36727270; PMCID: PMC9897764.
- Haffner JJ, Katemauswa M, Kagone TS, Hossain E, Jacobson D, Flores K, Parab AR, Obregon-Tito AJ, Tito RY, Reyes LM, Troncoso-Corzo L, Guija-Poma E, Meda N, Carabin H, Honap TP, Sankaranarayanan K, Lewis CM Jr, McCall LI. Untargeted Fecal Metabolomic Analyses across an Industrialization Gradient Reveal Shared Metabolites and Impact of Industrialization on Fecal Microbiome-Metabolome Interactions. mSystems. 2022 Dec 20;7(6):e0071022. doi: 10.1128/msystems.00710-22. Epub 2022 Nov 23. PMID: 36416540; PMCID: PMC9765122.
- : van der Gulik PTS, Hoff WD, Speijer D. Renewing Linnaean taxonomy: a proposal to restructure the highest levels of the Natural System. Biol Rev Camb Philos Soc. 2022 Nov 10. doi: 10.1111/brv.12920. Epub ahead of print. PMID: 36366773.
- Kao YF, Spainhour R, Cowan SR, Nafe L, Birkenheuer A, Reichard MV, Miller CA. A Serodiagnostic IgM ELISA to Detect Acute Cytauxzoonosis. Pathogens. 2022 Oct 14;11(10):1183. doi: 10.3390/pathogens11101183. PMID: 36297239; PMCID: PMC9611129.
- Wang R, Santos JM, Dufour JM, Stephens ER, Miranda JM, Washburn RL, Hibler T, Kaur G, Lin D, Shen CL. Ginger Root Extract Improves GI Health in Diabetic Rats by Improving Intestinal Integrity and Mitochondrial Function. Nutrients. 2022 Oct 19;14(20):4384. doi: 10.3390/nu14204384. PMID: 36297069; PMCID: PMC9611027.
- Jayathilake WMNK, Furr M, Risco C, Lacombe VA. Equine insulin dysregulation causes tissue specific alterations of proinflammatory cytokines and acute phase proteins in a NF-kB independent manner. Vet Immunol Immunopathol. 2022 Nov;253:110500. doi: 10.1016/j.vetimm.2022.110500. Epub 2022 Oct 8. PMID: 36244309.
- Ali A, Davidson S, Fraenkel E, Gilmore I, Hankemeier T, Kirwan JA, Lane AN, Lanekoff I, Larion M, McCall LI, Murphy M, Sweedler JV, Zhu C. Single cell metabolism: current and future trends. Metabolomics. 2022 Oct 1;18(10):77. doi: 10.1007/s11306-022-01934-3. PMID: 36181583.
- Lesani M, Gosmanov C, Paun A, Lewis MD, McCall LI. Impact of Visceral Leishmaniasis on Local Organ Metabolism in Hamsters. Metabolites. 2022 Aug 27;12(9):802. doi: 10.3390/metabo12090802. PMID: 36144206; PMCID: PMC9506185.
- Kannon M, Nebane NM, Ruiz P, McKellip S, Vinson PN, Mitra A. A Novel Approach To Identify Inhibitors of Iron Acquisition Systems of Pseudomonas aeruginosa. Microbiol Spectr. 2022 Oct 26;10(5):e0243722. doi: 10.1128/spectrum.02437-22. Epub 2022 Sep 13. PMID: 36098531; PMCID: PMC9604216.
- Williams NJ, Furr M, Navas de Solis C, Campolo A, Davis M, Lacombe VA. Investigating the Relationship Between Cardiac Function and Insulin Sensitivity in Horses: A Pilot Study. Front Vet Sci. 2022 Jul 8;9:899951. doi: 10.3389/fvets.2022.899951. PMID: 35873691; PMCID: PMC9305457.
- Nguyen TD, Lan Y, Kane SS, Haffner JJ, Liu R, McCall LI, Yang Z. Single-Cell Mass Spectrometry Enables Insight into Heterogeneity in Infectious Disease. Anal Chem. 2022 Aug 2;94(30):10567-10572. doi: 10.1021/acs.analchem.2c02279. Epub 2022 Jul 21. PMID: 35863111.
- Tamil Selvan M, Gunasekara S, Xiao P, Griffin K, Cowan SR, Narayanan S, Ramachandran A, Hagen DE, Ritchey JW, Rudd JM, Miller CA. SARS CoV-2 (Delta Variant) Infection Kinetics and Immunopathogenesis in Domestic Cats. Viruses. 2022 Jun 1;14(6):1207. doi: 10.3390/v14061207. PMID: 35746678; PMCID: PMC9230585.
- Rivera RM, Goldkamp AK, Patel BN, Hagen DE, Soto-Moreno EJ, Li Y, Kim CN, Miller C, Williams F 3rd, Jannaman E, Xiao Y, Tribulo P, Estrada-Cortés E, Brau-Rodríguez AR, Hansen PJ, Wu Z, Spinka CM, Martin N, Elsik CG. Identification of large offspring syndrome during pregnancy through ultrasonography and maternal blood transcriptome analyses. Sci Rep. 2022 Jun 22;12(1):10540. doi: 10.1038/s41598-022-14597-w. PMID: 35732675; PMCID: PMC9217928.
- Dean DA, Klechka L, Hossain E, Parab AR, Eaton K, Hinsdale M, McCall LI. Spatial Metabolomics Reveals Localized Impact of Influenza Virus Infection on the Lung Tissue Metabolome. mSystems. 2022 Aug 30;7(4):e0035322. doi: 10.1128/msystems.00353-22. Epub 2022 Jun 22. PMID: 35730946; PMCID: PMC9426520.
- Dijkman R, Verma AK, Selvaraj M, Ghimire R, Gad HH, Hartmann R, More S, Perlman S, Thiel V, Channappanavar R. Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice. J Virol. 2022 Jun 8;96(11):e0036422. doi: 10.1128/jvi.00364-22. Epub 2022 May 19. PMID: 35588276; PMCID: PMC9175626.
- Channappanavar R, Selvaraj M, More S, Perlman S. Alveolar macrophages protect mice from MERS-CoV-induced pneumonia and severe disease. Vet Pathol. 2022 Jul;59(4):627-638. doi: 10.1177/03009858221095270. Epub 2022 May 2. PMID: 35499307.
- Nunan E, Wright CL, Semola OA, Subramanian M, Balasubramanian P, Lovern PC, Fancher IS, Butcher JT. Obesity as a premature aging phenotype – implications for sarcopenic obesity. Geroscience. 2022 Jun;44(3):1393-1405. doi: 10.1007/s11357-022-00567-7. Epub 2022 Apr 26. PMID: 35471692; PMCID: PMC9213608.
- Habibi M, Goodarzi P, Shili CN, Sutton J, Wileman CM, Kim DM, Lin D, Pezeshki A. A Mixture of Valine and Isoleucine Restores the Growth of Protein-Restricted Pigs Likely through Improved Gut Development, Hepatic IGF-1 Pathway, and Plasma Metabolomic Profile. Int J Mol Sci. 2022 Mar 18;23(6):3300. doi: 10.3390/ijms23063300. PMID: 35328720; PMCID: PMC8955368.
- Shaw JH, Key CE, Snider TA, Sah P, Shaw EI, Fisher DJ, Lutter EI. Corrigendum: Genetic inactivation of <i>Chlamydia trachomatis</i> inclusion membrane protein CT228 alters MYPT1 recruitment, extrusion production, and longevity of infection. Front Cell Infect Microbiol. 2023 Feb 14;12:1075768. doi: 10.3389/fcimb.2022.1075768. Erratum for: Front Cell Infect Microbiol. 2018 Nov 30;8:415. PMID: 36865595; PMCID: PMC9974148.
- Hanafy RA, Wang Y, Stajich JE, Pratt CJ, Youssef NH, Elshahed MS. Phylogenomic analysis of the <i>Neocallimastigomycota</i>: proposal of <i>Caecomycetaceae</i> fam. nov., <i>Piromycetaceae</i> fam. nov., and emended description of the families <i>Neocallimastigaceae</i> and <i>Anaeromycetaceae</i>. Int J Syst Evol Microbiol. 2023 Feb;73(2). doi: 10.1099/ijsem.0.005735. PMID: 36827202.
- Alake SE, Lightfoot S, Wozniak K, Lin D, Chowanadisai W, Smith BJ, Lucas EA. Wheat Germ Supplementation Reduces Inflammation and Gut Epithelial Barrier Dysfunction in Female Interleukin-10 Knockout Mice Fed a Pro-Atherogenic Diet. J Nutr. 2023 Jan 9:S0022-3166(23)02510-5. doi: 10.1016/j.tjnut.2023.01.008. Epub ahead of print. PMID: 36813578.
- Najjari A, Boussetta A, Youssef N, Linares-Pastén JA, Mahjoubi M, Belloum R, Sghaier H, Cherif A, Ouzari HI. Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. Genetica. 2023 Apr;151(2):133-152. doi: 10.1007/s10709-023-00182-0. Epub 2023 Feb 16. PMID: 36795306.
- Leus IV, Adamiak J, Chandar B, Bonifay V, Zhao S, Walker SS, Squadroni B, Balibar CJ, Kinarivala N, Standke LC, Voss HU, Tan DS, Rybenkov VV, Zgurskaya HI. Functional Diversity of Gram-Negative Permeability Barriers Reflected in Antibacterial Activities and Intracellular Accumulation of Antibiotics. Antimicrob Agents Chemother. 2023 Feb 16;67(2):e0137722. doi: 10.1128/aac.01377-22. Epub 2023 Jan 30. PMID: 36715507; PMCID: PMC9933635.
- Martin L, Rostami S, Rajan R. Optimized protocols for the characterization of Cas12a activities. Methods Enzymol. 2023;679:97-129. doi: 10.1016/bs.mie.2022.08.048. PMID: 36682874.
- Thibivilliers S, Farmer A, Schroeder S, Libault M. Plant Single-Cell/Nucleus RNA-seq Workflow. Methods Mol Biol. 2023;2584:165-181. doi: 10.1007/978-1-0716-2756-3_6. PMID: 36495448.
- Lamichhane P, Terhüja M, Snider TA, Oomens AGP. Enhancing Anti-G Antibody Induction by a Live Single-Cycle Prefusion F-Expressing RSV Vaccine Improves In Vitro and In Vivo Efficacy. Viruses. 2022 Nov 9;14(11):2474. doi: 10.3390/v14112474. PMID: 36366572; PMCID: PMC9697216.
- Gerasimchuk N, Pinks K, Salpadoru T, Cotton K, Michka O, Patrauchan MA, Wozniak KL. Non-Antibiotic Antimony-Based Antimicrobials. Molecules. 2022 Oct 23;27(21):7171. doi: 10.3390/molecules27217171. PMID: 36363997; PMCID: PMC9654735.
- Manrique PD, López CA, Gnanakaran S, Rybenkov VV, Zgurskaya HI. New understanding of multidrug efflux and permeation in antibiotic resistance, persistence, and heteroresistance. Ann N Y Acad Sci. 2023 Jan;1519(1):46-62. doi: 10.1111/nyas.14921. Epub 2022 Nov 7. PMID: 36344198; PMCID: PMC9839546.
- Guo Y, Bamunuarachchi G, Vaddadi K, Zhu Z, Gandikota C, Ahmed K, Pushparaj S, More S, Xiao X, Yang X, Liang Y, Mukherjee S, Baviskar P, Huang C, Li S, Oomens AGP, Metcalf JP, Liu L. Axin1: A novel scaffold protein joins the antiviral network of interferon. Mol Microbiol. 2022 Dec;118(6):731-743. doi: 10.1111/mmi.14995. Epub 2022 Nov 5. PMID: 36308071; PMCID: PMC9789182.
- Lamichhane P, Schmidt ME, Terhüja M, Varga SM, Snider TA, Rostad CA, Oomens AGP. A live single-cycle RSV vaccine expressing prefusion F protein. Virology. 2022 Oct 15;577:51-64. doi: 10.1016/j.virol.2022.10.003. Epub ahead of print. PMID: 36306605.
- Hu Z, Leus IV, Chandar B, Sherborne BS, Avila QP, Rybenkov VV, Zgurskaya HI, Duerfeldt AS. Structure-Uptake Relationship Studies of Oxazolidinones in Gram-Negative ESKAPE Pathogens. J Med Chem. 2022 Oct 27;65(20):14144-14179. doi: 10.1021/acs.jmedchem.2c01349. Epub 2022 Oct 18. PMID: 36257060; PMCID: PMC9942527.
- Young D, Joshi A, Huang L, Munk B, Wurzbacher C, Youssef NH, Elshahed MS, Moon CD, Ochsenreither K, Griffith GW, Callaghan TM, Sczyrba A, Lebuhn M, Flad V. Simultaneous Metabarcoding and Quantification of <i>Neocallimastigomycetes</i> from Environmental Samples: Insights into Community Composition and Novel Lineages. Microorganisms. 2022 Aug 30;10(9):1749. doi: 10.3390/microorganisms10091749. PMID: 36144352; PMCID: PMC9504928.
- Flusche T, Rajan R. Molecular Details of DNA Integration by CRISPR-Associated Proteins During Adaptation in Bacteria and Archaea. Adv Exp Med Biol. 2022 Jul 20. doi: 10.1007/5584_2022_730. Epub ahead of print. PMID: 35852729.
- Elshahed MS, Hanafy RA, Cheng Y, Dagar SS, Edwards JE, Flad V, Fliegerová KO, Griffith GW, Kittelmann S, Lebuhn M, O'Malley MA, Podmirseg SM, Solomon KV, Vinzelj J, Young D, Youssef NH. Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota). Int J Syst Evol Microbiol. 2022 Jul;72(7). doi: 10.1099/ijsem.0.005449. PMID: 35852502.
- Duncan KT, Elshahed MS, Sundstrom KD, Little SE, Youssef NH. Influence of tick sex and geographic region on the microbiome of Dermacentor variabilis collected from dogs and cats across the United States. Ticks Tick Borne Dis. 2022 Sep;13(5):102002. doi: 10.1016/j.ttbdis.2022.102002. Epub 2022 Jul 5. PMID: 35810549.
- Hanafy RA, Dagar SS, Griffith GW, Pratt CJ, Youssef NH, Elshahed MS. Taxonomy of the anaerobic gut fungi (<i>Neocallimastigomycota</i>): a review of classification criteria and description of current taxa. Int J Syst Evol Microbiol. 2022 Jul;72(7). doi: 10.1099/ijsem.0.005322. PMID: 35776761.
- Tamil Selvan M, Gunasekara S, Xiao P, Griffin K, Cowan SR, Narayanan S, Ramachandran A, Hagen DE, Ritchey JW, Rudd JM, Miller CA. SARS CoV-2 (Delta Variant) Infection Kinetics and Immunopathogenesis in Domestic Cats. Viruses. 2022 Jun 1;14(6):1207. doi: 10.3390/v14061207. PMID: 35746678; PMCID: PMC9230585.
- Kayastha BB, Kubo A, Burch-Konda J, Dohmen RL, McCoy JL, Rogers RR, Mares S, Bevere J, Huckaby A, Witt W, Peng S, Chaudhary B, Mohanty S, Barbier M, Cook G, Deng J, Patrauchan MA. EF-hand protein, EfhP, specifically binds Ca<sup>2+</sup> and mediates Ca<sup>2+</sup> regulation of virulence in a human pathogen Pseudomonas aeruginosa. Sci Rep. 2022 May 25;12(1):8791. doi: 10.1038/s41598-022-12584-9. PMID: 35614085; PMCID: PMC9132961.
- Leus IV, Weeks JW, Bonifay V, Shen Y, Yang L, Cooper CJ, Nash D, Duerfeldt AS, Smith JC, Parks JM, Rybenkov VV, Zgurskaya HI. Property space mapping of Pseudomonas aeruginosa permeability to small molecules. Sci Rep. 2022 May 17;12(1):8220. doi: 10.1038/s41598-022-12376-1. PMID: 35581346; PMCID: PMC9114115.
- Zuber J, Schroeder SJ, Sun H, Turner DH, Mathews DH. Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. Nucleic Acids Res. 2022 May 20;50(9):5251-5262. doi: 10.1093/nar/gkac261. PMID: 35524574; PMCID: PMC9122537.
- Zuo Z, Babu K, Ganguly C, Zolekar A, Newsom S, Rajan R, Wang YC, Liu J. Rational Engineering of CRISPR-Cas9 Nuclease to Attenuate Position-Dependent Off-Target Effects. CRISPR J. 2022 Apr;5(2):329-340. doi: 10.1089/crispr.2021.0076. PMID: 35438515; PMCID: PMC9271410.
- Hahn CR, Farag IF, Murphy CL, Podar M, Elshahed MS, Youssef NH. Microbial Diversity and Sulfur Cycling in an Early Earth Analogue: From Ancient Novelty to Modern Commonality. mBio. 2022 Apr 26;13(2):e0001622. doi: 10.1128/mbio.00016-22. Epub 2022 Mar 8. PMID: 35258328; PMCID: PMC9040765.
- Zhao H, Clevenger AL, Coburn PS, Callegan MC, Rybenkov VV. Condensins are essential for Pseudomonas aeruginosa corneal virulence through their control of lifestyle and virulence programs. Mol Microbiol. 2022 Apr;117(4):937-957. doi: 10.1111/mmi.14883. Epub 2022 Feb 9. PMID: 35072315; PMCID: PMC9512581.
- Moen EL, Lam AK, Pusavat J, Wouters CL, Panlilio H, Heydarian N, Peng Z, Lan Y, Rice CV. Dimerization of 600 Da branched polyethylenimine improves β-lactam antibiotic potentiation against antibiotic-resistant Staphylococcus epidermidis and Pseudomonas aeruginosa. Chem Biol Drug Des. 2023 Mar;101(3):489-499. doi: 10.1111/cbdd.14009. Epub 2022 Jan 18. PMID: 34923750.
- Mentors/Core Directors
- Turner S, Raisley B, Roach K, Bajaña S, Munroe ME, James JA, Coggeshall KM, Kovats S. Gram-Positive Bacteria Cell Wall Peptidoglycan Polymers Activate Human Dendritic Cells to Produce IL-23 and IL-1β and Promote T<sub>H</sub>17 Cell Differentiation. Microorganisms. 2023 Jan 10;11(1):173. doi: 10.3390/microorganisms11010173. PMID: 36677464; PMCID: PMC9867153.
- Williamson KS, Dlakić M, Akiyama T, Franklin MJ. The <i>Pseudomonas aeruginosa</i> RpoH (σ<sup>32</sup>) Regulon and Its Role in Essential Cellular Functions, Starvation Survival, and Antibiotic Tolerance. Int J Mol Sci. 2023 Jan 12;24(2):1513. doi: 10.3390/ijms24021513. PMID: 36675051; PMCID: PMC9866376.
- Maurer JJ, Simoes-Barbosa A, Johnson TJ, Conway T. Editorial: The Interplay of Host-Microbiome-Pathogen on Infectious Diseases. Front Microbiol. 2022 May 18;13:924807. doi: 10.3389/fmicb.2022.924807. PMID: 35663864; PMCID: PMC9159748.
- Schmidt F, Zimmermann J, Tanna T, Farouni R, Conway T, Macpherson AJ, Platt RJ. Noninvasive assessment of gut function using transcriptional recording sentinel cells. Science. 2022 May 13;376(6594):eabm6038. doi: 10.1126/science.abm6038. Epub 2022 May 13. PMID: 35549411.
- Nunan E, Wright CL, Semola OA, Subramanian M, Balasubramanian P, Lovern PC, Fancher IS, Butcher JT. Obesity as a premature aging phenotype – implications for sarcopenic obesity. Geroscience. 2022 Jun;44(3):1393-1405. doi: 10.1007/s11357-022-00567-7. Epub 2022 Apr 26. PMID: 35471692; PMCID: PMC9213608.
- Stewart PS, Williamson KS, Boegli L, Hamerly T, White B, Scott L, Hu X, Mumey BM, Franklin MJ, Bothner B, Vital-Lopez FG, Wallqvist A, James GA. Search for a Shared Genetic or Biochemical Basis for Biofilm Tolerance to Antibiotics across Bacterial Species. Antimicrob Agents Chemother. 2022 Apr 19;66(4):e0002122. doi: 10.1128/aac.00021-22. Epub 2022 Mar 10. PMID: 35266829; PMCID: PMC9017379.
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- Center Investigators
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- Makoni M, Chatmethakul T, Giesinger R, McNamara PJ. Hemodynamic Precision in the Neonatal Intensive Care Unit using Targeted Neonatal Echocardiography. J Vis Exp. 2023 Jan 27;(191). doi: 10.3791/64257. PMID: 36779612.
- Zhou L, Wang R, Lin Z, Shi S, Chen C, Jiang H, Zou Z, Lu Z. Two venom serpins from the parasitoid wasp Microplitis mediator inhibit the host prophenoloxidase activation and antimicrobial peptide synthesis. Insect Biochem Mol Biol. 2023 Jan;152:103895. doi: 10.1016/j.ibmb.2022.103895. Epub 2022 Dec 17. PMID: 36538995.
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- Yin M, Kuang W, Wang Q, Wang X, Yuan C, Lin Z, Zhang H, Deng F, Jiang H, Gong P, Zou Z, Hu Z, Wang M. Dual roles and evolutionary implications of P26/poxin in antagonizing intracellular cGAS-STING and extracellular melanization immunity. Nat Commun. 2022 Nov 14;13(1):6934. doi: 10.1038/s41467-022-34761-0. PMID: 36376305; PMCID: PMC9663721.
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- Kariyawasam U, Gulati M, Wang Y, Bao H, Shan T, Li X, Cao X, Sumathipala N, Hu Y, Zhang X, Boons GJ, Jiang H. Preferential binding of DAP-PGs by major peptidoglycan recognition proteins found in cell-free hemolymph of Manduca sexta. Insect Biochem Mol Biol. 2022 Sep;148:103827. doi: 10.1016/j.ibmb.2022.103827. Epub 2022 Aug 23. PMID: 36007680.
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- Ofman G, Lang ML. Reply To Chang and Liaw. J Infect Dis. 2022 Apr 19;225(8):1494-1495. doi: 10.1093/infdis/jiab618. PMID: 34929040.
- Chen B, Ma J, Yang C, Xiao X, Kou W, Wu Z, Yun T, Zaw ZN, Nawan P, Sengprakhon R, Zhou J, Wang J, Sun R, Zhang X, Xie G, Lan G. Diversified land conversion deepens understanding of impacts of rapid rubber plantation expansion on plant diversity in the tropics. Sci Total Environ. 2023 Mar 1;874:162505. doi: 10.1016/j.scitotenv.2023.162505. Epub ahead of print. PMID: 36863580.
- Xin J, Yang J, Jiang Y, Shi Z, Jin C, Xiao X, Xia JC, Yang R. Variations of Urban Thermal Risk with Local Climate Zones. Int J Environ Res Public Health. 2023 Feb 13;20(4):3283. doi: 10.3390/ijerph20043283. PMID: 36833977; PMCID: PMC9966086.
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- Raguraman R, Bhavsar D, Kim D, Ren X, Sikavitsas V, Munshi A, Ramesh R. Tumor-targeted exosomes for delivery of anticancer drugs. Cancer Lett. 2023 Apr 1;558:216093. doi: 10.1016/j.canlet.2023.216093. Epub 2023 Feb 21. PMID: 36822543.
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- Shi Z, Jiang Y, Zhai X, Zhang Y, Xiao X, Xia J. Assessment of changes in environmental factors in a tourism-oriented Island. Front Public Health. 2023 Jan 9;10:1090497. doi: 10.3389/fpubh.2022.1090497. PMID: 36699879; PMCID: PMC9868254.
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- Wang X, Xiao X, Zhang X, Wu J, Li B. Rapid and large changes in coastal wetland structure in China's four major river deltas. Glob Chang Biol. 2023 Jan 18. doi: 10.1111/gcb.16583. Epub ahead of print. PMID: 36653974.
- Yang X, Xiao X, Zhang C. Spatiotemporal variability and key factors of evergreen forest encroachment in the southern Great Plains. J Environ Manage. 2023 Mar 1;329:117012. doi: 10.1016/j.jenvman.2022.117012. Epub 2023 Jan 4. PMID: 36608618.
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- Heydarian N, Wouters CL, Neel A, Ferrell M, Panlilio H, Haight T, Gu T, Rice CV. Eradicating Biofilms of Carbapenem-Resistant Enterobacteriaceae by Simultaneously Dispersing the Biomass and Killing Planktonic Bacteria with PEGylated Branched Polyethyleneimine. ChemMedChem. 2023 Feb 1;18(3):e202200428. doi: 10.1002/cmdc.202200428. Epub 2023 Jan 5. PMID: 36542457; PMCID: PMC9899318.
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- Mehta M, Raguraman R, Ramesh R, Munshi A. RNA binding proteins (RBPs) and their role in DNA damage and radiation response in cancer. Adv Drug Deliv Rev. 2022 Dec;191:114569. doi: 10.1016/j.addr.2022.114569. Epub 2022 Oct 14. PMID: 36252617.
- Tsai K, Ma C, Han X, Allaire J, Healey GR, Crowley SM, Yu H, Jacobson K, Xia L, Priatel JJ, Vallance BA. Highly Sensitive, Flow Cytometry-Based Measurement of Intestinal Permeability in Models of Experimental Colitis. Cell Mol Gastroenterol Hepatol. 2023;15(2):425-438. doi: 10.1016/j.jcmgh.2022.10.004. Epub 2022 Oct 13. PMID: 36244647; PMCID: PMC9791122.
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