Publications July 1, 2017 - June 30, 2018

Shaw JH, Behar AR, Snider TA, Allen NA, Lutter EI. Comparison of Murine Cervicovaginal Infection by Chlamydial Strains: Identification of Extrusions Shed In vivo. Front Cell Infect Microbiol. 2017 Feb 3; 7:18. doi: 10.3389/fcimb.2017.00018. eCollection 2017. PMID: 28217555

Wang L, Fu B, Li W, Patil G, Liu L, Dorf ME, Li S. Comparative influenza protein interactomes identify the role of plakophilin 2 in virus restriction. Nat Commun. 2017 Feb 7; 8:13876. doi: 10.1038/ncomms13876. PMID: 28169297

VanOsdol J, Ektate K, Ramasamy S, Maples D, Collins W, Malayer J, Ranjan A. Sequential HIFU heating and nanobubble encapsulation provide efficient drug penetration from stealth and temperature sensitive liposomes in colon cancer. J Control Release. 2017 Feb 10; 247:55-63. doi: 10.1016/j.jconrel.2016.12.033. Epub 2016 Dec 30. PMID: 28042085

Sun A, Wei J, Childress C, Shaw JH 4th, Peng K, Shao G, Yang W, Lin Q. The E3 ubiquitin ligase NEDD4 is an LC3-interactive protein and regulates autophagy. Autophagy. 2017 Mar 4;13(3):522-537. doi: 10.1080/15548627.2016.1268301. Epub 2017 Jan 13. PMID: 28085563

Awasthi S. Intranasal Antifungal Vaccination Using DNA-Transfected Dendritic Cells. Methods Mol Biol. 2017; 1625:75-83. doi: 10.1007/978-1-4939-7104-6_6. PMID: 28584984

Ruggiero SM, Pilvankar MR, Ford Versypt AN. Computational Modeling of Tuberculosis Granuloma Activation. Processes. 2017; 5,79.

Subramanian R, Bhowmick R, Gappa-Fahlenkamp H. Design of a novel method for the spatial distribution of cells within a porous scaffold for a 3D human tissue-engineered lung model. Journal of Tissue Science and Engineering. 2017 8:2. Doi: 10.4172/21577552.1000201.

Ghousifam N, Mortazavian H, Bhowmick R, Vasquez Y, Blum FD, Gappa-Fahlenkamp H. A three-dimensional in vitro model to demonstrate the haptotactic effect of monocyte chemoattractant protein-1 on atherosclerosis-associated monocyte migration. Int J Biol Macromol. 2017 Apr; 97:141-147. doi: 10.1016/j.ijbiomac.2016.12.072. Epub 2016 Dec 29. PMID: 28041913

Fennell CJ, Ghousifam N, Haseleu JM, Gappa-Fahlenkamp H. Computational Signaling Protein Dynamics and Geometric Mass Relations in Biomolecular Diffusion. J Phys Chem B. 2018 Mar 14. doi: 10.1021/acs.jpcb.7b11846. [Epub ahead of print] PMID: 29510047

Krumm B, Meng X, Xiang Y, Deng J. Identification of small molecule inhibitors of Interleukin-18. Sci Rep. 2017 Mar 28;7(1):483. doi: 10.1038/s41598-017-00532-x. PMID: 28352119

Meng X, Rose L, Han Y, Deng J, Xiang Y. Vaccinia Virus A6 Is a Two-Domain Protein Requiring a Cognate N-Terminal Domain for Full Viral Membrane Assembly Activity. J Virol. 2017 Apr 28;91(10). pii: e02405-16. doi: 10.1128/JVI.02405-16. Print 2017 May 15. PMID: 28275183

Khandelwal A, Kent CN, Balch M, Peng S, Mishra SJ, Deng J, Day VW, Liu W, Subramanian C, Cohen M, Holzbeierlein JM, Matts R, Blagg BSJ. Structure-guided design of an Hsp90β N-terminal isoform-selective inhibitor. Nat Commun. 2018 Jan 30;9(1):425. doi: 10.1038/s41467-017-02013-1. PMID: 29382832

Fu B, Wang L, Li S, Dorf ME. ZMPSTE24 defends against influenza and other pathogenic viruses. J Exp Med. 2017 Apr 3;214(4):919-929. doi: 10.1084/jem.20161270. Epub 2017 Feb 28. PMID: 28246125

Li Y, Lavey NP, Coker JA, Knobbe JE, Truong DC, Yu H, Lin YS, Nimmo SL, Duerfeldt AS. Consequences of Depsipeptide Substitution on the ClpP Activation Activity of Antibacterial Acyldepsipeptides. ACS Med Chem Lett. 2017 Oct 19;8(11):1171-1176. doi: 10.1021/acsmedchemlett.7b00320. eCollection 2017 Nov 9. PMID: 29152050

Dou X, Nath D, Shin Y, Ma J, Duerfeldt AS. Structure-Guided Evolution of a 2-Phenyl-4-carboxyquinoline Chemotype into PPARα Selective Agonists: New Leads for Oculovascular Conditions. Bioorg. Med. Chem. Lett. 2018.

Ruggiero SM, Zhao J, Ford Versypt AN. Building a MATLAB graphical user Interface to Solve Ordinary Differential Equations as a Final Project for an Interdisciplinary Elective Course on Numerical Computing. Journal of Computational Science Education. 2018.

Avila QP, Zqurskaya HI, Duerfeldt AS, Recent Advances towards Rational Antibacterial Discovery: Addressing Permeation and Efflux. ACS Med. Chem. Rev. 2017, 52, 319-339.

Que NLS, Crowley VM, Duerfeldt AS, Zhao J, Kent CN, Blagg BSJ, Gewirth DT. Structure based design of a Grp94-selective inhibitor: Exploiting a key residue in Grp94 to optimize paralog-selective binding. J Med Chem. 2018 Mar 12. doi: 10.1021/acs.jmedchem.7b01608. [Epub ahead of print] PMID: 29528635

Irfan SA, Razali R, KuShaari K, Mansor N, Azeem B, Ford Versypt AN. A review of mathematical modeling and simulation of controlled-release fertilizers. J Control Release. 2018 Feb 10; 271:45-54. doi: 10.1016/j.jconrel.2017.12.017. Epub 2017 Dec 22. Review. PMID: 29274697

Pilvankar MR, Higgins MA, Ford Versypt AN. Mathematical Model for Glucose Dependence of the Local Renin-Angiotensin System in Podocytes. Bull Math Biol. 2018 Mar 8. doi: 10.1007/s11538-018-0408-4. [Epub ahead of print] PMID: 29520569

Mix LT, Carroll EC, Morozov D, Pan J, Gordon WR, Philip A, Fuzell J, Kumauchi M, van Stokkum I, Groenhof G, Hoff WD, Larsen DS. Excitation-Wavelength-Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila. Biochemistry. 2018 Mar 6. doi: 10.1021/acs.biochem.7b01114. [Epub ahead of print] PMID: 29465990

Kottke T, Xie A, Larsen DS, Hoff WD. Photoreceptors Take Charge: Emerging Principles for Light Sensing. Annu Rev Biophys. 2018 Mar 14. doi: 10.1146/annurev-biophys-070317-033047. [Epub ahead of print] PMID: 29539272

Maria Z, Lacombe VA. Quantification of Cell-Surface Glucose Transporters in the Heart Using a Biotinylated Photolabeling Assay. Methods Mol Biol. 2018; 1713:229-240. doi: 10.1007/978-1-4939-7507-5_17. PMID: 29218529

Maria Z, Campolo AR, Scherlag BJ, Ritchey JW, Lacombe VA. Dysregulation of insulin-sensitive glucose transporters during insulin resistance-induced atrial fibrillation. Biochim Biophys Acta. 2018 Apr;1864(4 Pt A):987-996. doi: 10.1016/j.bbadis.2017.12.038. Epub 2017 Dec 29. PMID: 29291943

Fu B, Zhao M, Wang L, Patil G, Smith JA, Juncadella IJ, Zuvela-Jelaska L, Dorf ME, Li S. RNAi Screen and Proteomics Reveal NXF1 as a Novel Regulator of IRF5 Signaling. Sci Rep. 2017 Jun 2;7(1):2683. doi: 10.1038/s41598-017-02857-z. PMID: 28578407

Li S, Fu B, Wang L, Dorf ME. ZMPSTE24 Is Downstream Effector of Interferon-Induced Transmembrane Antiviral Activity. DNA Cell Biol. 2017 Jul;36(7):513-517. doi: 10.1089/dna.2017.3791. Epub 2017 Jun 8. PMID: 28594571

Zhao M, Wang L, Li S. Influenza A Virus-Host Protein Interactions Control Viral Pathogenesis. Int J Mol Sci. 2017 Aug 1;18(8). pii: E1673. doi: 10.3390/ijms18081673. Review. PMID: 28763020

Passow CN, Henpita C, Shaw JH, Quackenbush CR, Warren WC, Schartl M, Arias-Rodriguez L, Kelley JL, Tobler M. The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish. Mol Ecol. 2017 Nov;26(22):6384-6399. doi: 10.1111/mec.14360. Epub 2017 Oct 10. PMID: 28926156

Wang Y, Lin D, Wang X, Zhu W, Ye J, Li G, Ma Z, Deng X. Data on water consumption in streptozotocin-induced diabetic mice by a novel peach gum-derived polysaccharide. Data Brief. 2017 Apr 23; 12:358-360. doi: 10.1016/j.dib.2017.04.022. eCollection 2017 Jun. PMID: 28491939

Wu L, Guo X, Hartson SD, Davis MA, He H, Medeiros DM, Wang W, Clarke SL, Lucas EA, Smith BJ, von Lintig J, Lin D. Lack of β, β-carotene-9', 10'-oxygenase 2 leads to hepatic mitochondrial dysfunction and cellular oxidative stress in mice. Mol Nutr Food Res. 2017 May;61(5). doi: 10.1002/mnfr.201600576. Epub 2017 Feb 9. PMID: 27991717

Wang Y, Lin D, Wang X, Zhu W, Ye J, Li G, Ma Z, Deng X. The impact of a novel peach gum-derived polysaccharide on postprandial blood glucose control in streptozotocin-induced diabetic mice. Int J Biol Macromol. 2017 May; 98:379-386. doi: 10.1016/j.ijbiomac.2017.01.085. Epub 2017 Jan 20. PMID: 28115227

Cheng L, Ren Y, Lin D, Peng S, Zhong B, Ma Z. The Anti-Inflammatory Properties of Citrus wilsonii Tanaka Extract in LPS-Induced RAW 264.7 and Primary Mouse Bone Marrow-Derived Dendritic Cells. Molecules. 2017 Jul 19;22(7). pii: E1213. doi: 10.3390/molecules22071213. PMID: 28753918

Guo X, Wu L, Lyu Y, Chowanadisai W, Clarke SL, Lucas EA, Smith BJ, He H, Wang W, Medeiros DM, Lin D. Ablation of β,β-carotene-9',10'-oxygenase 2 remodels the hypothalamic metabolome leading to metabolic disorders in mice. J Nutr Biochem. 2017 Aug; 46:74-82. doi: 10.1016/j.jnutbio.2017.02.019. Epub 2017 Apr 12. PMID: 28482236

Wu L, Guo X, Lyu Y, Clarke SL, Lucas EA, Smith BJ, Hildebrand D, Wang W, Medeiros DM, Shen X, Lin D. Targeted Metabolomics Reveals Abnormal Hepatic Energy Metabolism by Depletion of β-Carotene Oxygenase 2 in Mice. Sci Rep. 2017 Nov 7;7(1):14624. doi: 10.1038/s41598-017-15222-x. PMID: 29116185

Yu Y, Wang L, Wang Y, Lin D, Liu J. Hepatoprotective Effect of Albumin Peptides from Corn Germ Meal on Chronic Alcohol-Induced Liver Injury in Mice. J Food Sci. 2017 Dec;82(12):2997-3004. doi: 10.1111/1750-3841.13953. Epub 2017 Oct 30. PMID: 29083487

Lyu Y, Wu L, Wang F, Shen X, Lin D. Carotenoid supplementation and retinoic acid in immunoglobulin A regulation of the gut microbiota dysbiosis. Exp Biol Med (Maywood). 2018 Jan 1:1535370218763760. doi: 10.1177/1535370218763760. [Epub ahead of print] PMID: 29534601

Hua S, Zhang Y, Liu J, Dong L, Huang J, Lin D, Fu X. Ethnomedicine, Phytochemistry and Pharmacology of Smilax glabra: An Important Traditional Chinese Medicine. Am J Chin Med. 2018;46(2):261-297. doi: 10.1142/S0192415X18500143. Epub 2018 Feb 12. PMID: 29433390

Wu J, Deng W, Lin D, Deng X, Ma Z. Immunoblotting Quantification Approach for Identifying Potential Hypoallergenic Citrus Cultivars. J Agric Food Chem. 2018 Feb 28;66(8):1964-1973. doi: 10.1021/acs.jafc.7b05722. Epub 2018 Feb 16. PMID: 29420890

Huang J, Zhang Y, Dong L, Gao Q, Yin L, Quan H, Chen R, Fu X, Lin D. Ethnopharmacology, phytochemistry, and pharmacology of Cornus officinalis Sieb. et Zucc. J Ethnopharmacol. 2018 Mar 1; 213:280-301. doi: 10.1016/j.jep.2017.11.010. Epub 2017 Nov 17. Review. PMID: 29155174

Luedtke BE, Mahapatra S, Lutter EI, Shaw EI. The Coxiella Burnetii type IVB secretion system (T4BSS) component DotA is released/secreted during infection of host cells and during in vitro growth in a T4BSS-dependent manner. Pathog Dis. 2017 Jun 1;75(4). doi: 10.1093/femspd/ftx047. PMID: 28449081

Nguyen PH, Lutter EI, Hackstadt T. Chlamydia trachomatis inclusion membrane protein MrcA interacts with the inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) to regulate extrusion formation. PLoS Pathog. 2018 Mar 15;14(3):e1006911. doi: 10.1371/journal.ppat.1006911. eCollection 2018 Mar. PMID: 29543918

Banse HE, Schultz N, McCue M, Geor R, McFarlane D. Comparison of two methods for measurement of equine adrenocorticotropin. J Vet Diagn Invest. 2018 Mar;30(2):233-237. doi: 10.1177/1040638717752216. Epub 2017 Dec 28. PMID: 29284383

Sahoo K, Karumuri S, Hikkaduwa Koralege RS, Flynn NH, Hartson S, Liu J, Ramsey JD, Kalkan AK, Pope C, Ranjan A. Molecular and Biocompatibility Characterization of Red Blood Cell Membrane Targeted and Cell-Penetrating-Peptide-Modified Polymeric Nanoparticles. Mol Pharm. 2017 Jul 3;14(7):2224-2235. doi: 10.1021/acs.molpharmaceut.7b00053. Epub 2017 Jun 21. PMID: 28505457

Hester K, Liu J, Flynn N, Sultatos LG, Geng L, Brimijoin S, Ramsey JD, Hartson S, Ranjan A, Pope C. Polyionic complexes of butyrylcholinesterase and poly-l-lysine-g-poly(ethylene glycol): Comparative kinetics of catalysis and inhibition and in vitro inactivation by proteases and heat. Chem Biol Interact. 2017 Sep 25; 275:86-94. doi: 10.1016/j.cbi.2017.07.019. Epub 2017 Jul 27. PMID: 28756151

Nigatu AS, Ashar H, Sethuraman SN, Wardlow R, Maples D, Malayer J, Ranjan A. Elastin-like polypeptide incorporated thermally sensitive liposome improve antibiotic therapy against musculoskeletal bacterial pathogens. Int J Hyperthermia. 2018 Mar;34(2):201-208. doi: 10.1080/02656736.2017.1420249. PMID: 29278945

Munaweera I, Shaikh S, Maples D, Nigatu AS, Sethuraman SN, Ranjan A, Greenberg DE, Chopra R. Temperature-sensitive liposomal ciprofloxacin for the treatment of biofilm on infected metal implants using alternating magnetic fields. Int J Hyperthermia. 2018 Mar;34(2):189-200. doi: 10.1080/02656736.2017.1422028. PMID: 29498309

Wardlow R, Sahoo K, Dugat D, Malayer J, Ranjan A. High Intensity Focused Ultrasound (HIFU) Heating Improves Perfusion and Antimicrobial Efficacy in Mouse Staphylococcus Abscess. Ultrasound Med Biol. 2018 Apr;44(4):909-914. doi: 10.1016/j.ultrasmedbio.2017.12.014. PMID: 29395679

Haynes KM, Abdali N, Jhawar V, Zgurskaya HI, Parks JM, Green AT, Baudry J, Rybenkov VV, Smith JC, Walker JK. Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli. J Med Chem. 2017 Jul 27;60(14):6205-6219. doi: 10.1021/acs.jmedchem.7b00453. Epub 2017 Jul 11. PMID: 28650638

Westfall DA, Krishnamoorthy G, Wolloscheck D, Sarkar R, Zgurskaya HI, Rybenkov VV. Bifurcation kinetics of drug uptake by Gram-negative bacteria. PLoS One. 2017 Sep 19;12(9): e0184671. doi: 10.1371/journal.pone.0184671. eCollection 2017. PMID: 28926596

Krishnamoorthy G, Leus IV, Weeks JW, Wolloscheck D, Rybenkov VV, Zgurskaya HI. Synergy between Active Efflux and Outer Membrane Diffusion Defines Rules of Antibiotic Permeation into Gram-Negative Bacteria. MBio. 2017 Oct 31;8(5). pii: e01172-17. doi: 10.1128/mBio.01172-17. PMID: 29089426

Zgurskaya HI, Rybenkov VV, Krishnamoorthy G, Leus IV. Trans-envelope multidrug efflux pumps of Gram-negative bacteria and their synergism with the outer membrane barrier. Res Microbiol. 2018 Feb 16. pii: S0923-2508(18)30022-6. doi: 10.1016/j.resmic.2018.02.002. [Epub ahead of print] PMID: 29454787

Jousset A, Bienhold C, Chatzinotas A, Gallien L, Gobet A, Kurm V, Küsel K, Rillig MC, Rivett DW, Salles JF, van der Heijden MG, Youssef NH, Zhang X, Wei Z, Hol WH. Where less may be more: how the rare biosphere pulls ecosystems strings. ISME J. 2017 Apr;11(4):853-862. doi: 10.1038/ismej.2016.174. Epub 2017 Jan 10. PMID: 28072420

Ranganathan A, Smith OP, Youssef NH, Struchtemeyer CG, Atiyeh HK, Elshahed MS. Utilizing Anaerobic Fungi for Two-stage Sugar Extraction and Biofuel Production from Lignocellulosic Biomass. Front Microbiol. 2017 Apr 11;8:635. doi: 10.3389/fmicb.2017.00635. eCollection 2017. PMID: 28443088

Farag IF, Youssef NH, Elshahed MS. Global Distribution Patterns and Pangenomic Diversity of the Candidate Phylum "Latescibacteria" (WS3). Appl Environ Microbiol. 2017 May 1;83(10). pii: e00521-17. doi: 10.1128/AEM.00521-17. Print 2017 May 15. PMID: 28314726

Morrison JM, Baker KD, Zamor RM, Nikolai S, Elshahed MS, Youssef NH. Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA). PLoS One. 2017 May 11;12(5):e0177488. doi: 10.1371/journal.pone.0177488. eCollection 2017. PMID: 28493994

Calkins SS, Elledge NC, Mueller KE, Marek SM, Couger MB, Elshahed MS, Youssef NH. Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus Pecoramyces ruminantium strain C1A. PeerJ. 2018 Jan 30;6:e4276. doi: 10.7717/peerj.4276. eCollection 2018. PMID: 29404209